CONN : functional connectivity toolbox
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, ICA, masked ICA, fc-MVPA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, fc-MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
https://www.conn-toolbox.org
Execution Options
Specifications
Associations
Recent Activity - Forums
Beginner question: scripting the preprocessing posted by pengwg 11 hours ago
HPC Help posted by Collin Wilson 13 hours ago
Flat ROI values for surface-based analysis posted by tposside 13 hours ago
RE: Fail to identify the atlas file as ROIs posted by Chihhao Lien 22 hours ago
parameters for running multiple comparisons posted by Hayreddin Said Unsal on Apr 22
CONN Matrix display posted by Rutva Master on Apr 21
RE: Fail to identify the atlas file as ROIs posted by Chihhao Lien on Apr 21
subgroup analysis posted by Yuan Cao on Apr 21
conn_batch distributed preprocessing posted by max345 on Apr 18
Recent Activity - News
Online CONN 2023 workshop starting soon posted by Alfonso Nieto-Castanon on Nov 9, 2023
CONN new release posted by Alfonso Nieto-Castanon on Mar 15, 2023
CONN new release posted by Alfonso Nieto-Castanon on Feb 18, 2020
New CONN release and tutorials posted by Alfonso Nieto-Castanon on Jun 27, 2017
CONN New Year News posted by Alfonso Nieto-Castanon on Jan 12, 2017
CONN new release (15f) posted by Alfonso Nieto-Castanon on Sep 25, 2015
Announcing Cincinnati CONN course (MGH/HST) posted by Alfonso Nieto-Castanon on Jun 9, 2015
CONN v.13n Released posted by Alfonso Nieto-Castanon on Jul 8, 2013
conn toolbox version 13 released posted by Alfonso Nieto-Castanon on Oct 31, 2011
Recent Activity - Files
conn22a.zip posted by Alfonso Nieto-Castanon on Mar 10, 2023
conn: older releases: conn v.21.a (last 2021 release) release
conn21a.zip posted by Alfonso Nieto-Castanon on Dec 31, 2021
conn: older releases: conn v.20.b (last 2020 release) release
conn20b.zip posted by Alfonso Nieto-Castanon on Dec 1, 2020
conn: older releases: conn v.19.c (last 2019 release) release
conn19c.zip posted by Alfonso Nieto-Castanon on Mar 14, 2020