GAMBIT Releases

GAMBIT_Executables GAMBIT_Executables_1.3

cvachet@www.nitrc.org (Clement Vachet) — Mon, 23 May 2011 19:19:00 GMT

- Inputs/Outputs:
   - Add new input mask: exclusion area (e.g brainstem, cerebellum)
   - Add new option: output data subdirectory (default: GAMBIT)
- Bias Field correction:

    - Rename suffix to 'bias' (instead of 'biasfieldcorrected')
- Post-process label image
    - Combine AbsoluteWMMask and LatVent
    - Create label map for cortical thickness measurement via LabelSegPostProcess (use of input masks, filling...)
- Surface area:
    - Compute direct surface area measurements, without the need of a parcellation map...
    - Implement interpolated surface area on corresponding meshes
    - QC: Implement mean surface area
- Particle correspondence:
    - Update ParticleCorrespondencePostProcessing parameter file with newer version of ParticleCorrespondencePostProcessing tool
- Particle correspondence PostProcessing QC:
    - Create QC parameter file (to be run with ShapeWorksShop for particle correspondence QC)
    - Mean corresponding attribute computation (CortThick/SulcalDepth/Surface area)
- MRML scene creation:
    - create attributes within non-corresponding VTK meshes (MeshMath -KWMtoPolyData)
    - remove random coloring for meshes
- Applications:
    - SegPostProcessCLP has been updated (Filling update)
    - ShapeWorksRun: Attribute scalars bug has been fixed
    - add MeshCortThick: used for cortical thickness attribute computation
    - add LabelSegPostProcess

GAMBIT_Executables GAMBIT_Executables_1.2

cvachet@www.nitrc.org (Clement Vachet) — Fri, 08 Oct 2010 20:22:00 GMT

- Add sulcal depth information as a local feature (besides spatial proximity) to drive group-wise shape correspondence optimization
- Bug fixes

GAMBIT_Executables GAMBIT_Executables_1.1

cvachet@www.nitrc.org (Clement Vachet) — Fri, 08 Oct 2010 20:19:00 GMT

- Add N4 intensity inhomogeneity correction
- Update registration: Demons fluid registration using BRAINSDemonWarp, or B-Spline registration using Brainsfit
- Consider multi-channel images and possibly tissue segmentation label maps
- Perform skull-stripping on all multi-channel images
- Option to skip tissue segmentation step
- Option to skip skull-stripping step
- Improved Quality control MRML scenes with snapshots (sulcal depth and cortical thickness as scalar attributes)
- Bug fixes

GAMBIT_Executables GAMBIT_Executables_1.0

cvachet@www.nitrc.org (Clement Vachet) — Tue, 15 Jun 2010 20:00:00 GMT

GAMBIT_Tutorial_Dataset GAMBIT_Tutorial_example_1.0

cvachet@www.nitrc.org (Clement Vachet) — Tue, 15 Jun 2010 20:06:00 GMT