3dbar 3dbar_v_0.1

abukaj@www.nitrc.org (Jakub Kowalski) — Sun, 02 Oct 2011 10:51:00 GMT

The package contains standalone version of the 3d Brain Atlas Reconstruction software:
- API for CAF datasets manipulation,
- set of parsers allowing to create CAF datasets from existing brain atlasses,
- tools for performing reconstruction of the brain structures from CAF datasets (both in interactive and batch mode).

Parsers for the following brain atlases are availiable:
1. ScalableBrainAtlas DB08 template
    (http://scalablebrainatlas.incf.org/main/coronal3d.php?template=DB08),
2. ScalableBrainAtlas PHT00 template
    (http://scalablebrainatlas.incf.org/main/coronal3d.php?template=PHT00),
3. ScalableBrainAtlas WHS09 template
    (http://scalablebrainatlas.incf.org/main/coronal3d.php?template=WHS09),
4. ScalableBrainAtlas WHS10 template
    (http://scalablebrainatlas.incf.org/main/coronal3d.php?template=WHS10),
5. ScalableBrainAtlas LPBA40_on_SRI24 template
    (http://scalablebrainatlas.incf.org/main/coronal3d.php?template=LPBA40_on_SRI24),
6. ScalableBrainAtlas RM_on_F99 template
    (http://scalablebrainatlas.incf.org/main/coronal3d.php?template=RM_on_F99),
7. the Waxholm Space Atlas (the source mouse brain volumetric dataset),
8. the Waxholm Space Atlas (the source mouse brain volumetric dataset) - another
    delineation
    (http://software.incf.org/software/waxholm-space/waxholm-space/LabeledAtlas0.5.1/file_download?file_field=file),
9. Paxinos and Watson "The Rat Brain in Stereotaxic Coordinates" atlas,
10. Franklin and Paxinos "The Mouse Brain in Stereotaxic Coordinates" atlas,
11. The Allen Mouse Brain Atlas
    (http://mouse.brain-map.org/atlas/index.html).

Note that the atlas data required by parsers are not contained in the package and has to be automatically downloaded from Internet (or provided by user). See README file for details.

3d Brain Atlas Reconstructor Releases

3dbar 3dbar_v_0.1