Copyright 1999-2000 VA Linux Systems, Inc. http://www.nitrc.org Anima Latest News http://www.nitrc.org/forum/forum.php?forum_id=9853 We are happy to announce the release of version 4.2 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools) ! This is a feature update and bug-fix release to Anima v4.1.1. Please refer to the release notes for more details. Anima Olivier Commowick Fri, 29 Jul 2022 1:27:51 GMT http://www.nitrc.org/forum/forum.php?forum_id=9739 We are happy to announce the release of version 4.1.1 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools) ! This is a bug-fix release to Anima v4.1. Please refer to the release notes for more details. Anima Olivier Commowick Wed, 12 Jan 2022 1:49:51 GMT http://www.nitrc.org/forum/forum.php?forum_id=9615 We are happy to announce the release of version 4.1 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools) ! This is a feature update release with along tracts statistics tools. Please refer to the release notes for more details. Anima Olivier Commowick Tue, 01 Jun 2021 1:43:36 GMT http://www.nitrc.org/forum/forum.php?forum_id=9563 We are happy to announce the release of version 4.0 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a bug fix release with some bug corrections plus an update of deterministic tractography. Please refer to the release notes for more details. Anima Olivier Commowick Tue, 23 Feb 2021 6:23:47 GMT http://www.nitrc.org/forum/forum.php?forum_id=9493 We are happy to announce the release of version 4.0 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a major release with a focus on making algorithms faster, updating major dependencies and introducing a new website and documentation. Please refer to the release notes for more details. Anima Olivier Commowick Fri, 04 Sep 2020 2:45:51 GMT http://www.nitrc.org/forum/forum.php?forum_id=9405 Version 3.3 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a minor release with a focus on major bugs correction and new DWI simulation and majority voting tools. Changes include (but are not limited to):<br /> <br /> - Correct memory leak that was affecting all registration tools<br /> - Correct long running Levenberg Marquardt optimization bug in MCM estimation (introduces an all new bounded LM optimizer)<br /> - Switch back to previous mutli-threading scheme as ITK 5 one is not that great<br /> - Add binary versions of DWI simulation from diffusion tensors or multi-compartment models (animaDWISimulatorFromDTI and animaDWISimulationFromMCM)<br /> - Add a majority voting tool (animaMajorityLabelVoting)<br /> - New release of Anima scripts v2.2 along with this release<br /> - Other minor bug corrections<br /> Anima Olivier Commowick Thu, 12 Mar 2020 8:13:12 GMT http://www.nitrc.org/forum/forum.php?forum_id=9352 Version 3.3 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a minor release with a focus on ITK5, updated relaxometry and tractography tools. Changes include (but are not limited to):<br /> <br /> - Switch to ITK 5<br /> - Switch to C++17 standard (now required for some tools)<br /> - Much faster implementation of some relaxometry tools including animaGMMT2RelaxometryEstimation<br /> - DTI tractography closer to the article of Weinstein et al., 1999<br /> - New release of Anima scripts v2.1 along with this release<br /> - minor bug corrections<br /> Anima Olivier Commowick Mon, 25 Nov 2019 2:08:56 GMT http://www.nitrc.org/forum/forum.php?forum_id=9147 Version 3.2 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a minor release for the ISMRM conference with a focus on new relaxometry and registration tools published there. Changes include (but are not limited to):<br /> <br /> - Among new things are the following:<br /> <br /> - Sparse initialization for multi-compartment models estimation<br /> - Addition of Stanisz isotropic compartment model<br /> - Possibility to add priors to MS lesion graph cuts segmentation<br /> - Change transformation default extrapolation in non linear registration<br /> - Addition of validation tools used for the MICCAI MSSEG 2016 challenge<br /> - animaDetectedComponents, animaSegPerfAnalyzer<br /> - Addition of some basic tools:<br /> - linear transformation to stationary velocity field<br /> - output of nearest rigid transform in linear registration<br /> - image resolution changer tool<br /> - New release of Anima scripts v2.0 along with this release<br /> - Other minor bug corrections/evolutions<br /> <br /> Binary release download link: https://www.nitrc.org/frs/?group_id=973<br /> Source code link (and documentation wiki): https://github.com/Inria-Visages/Anima-Public Anima Olivier Commowick Tue, 02 Apr 2019 2:20:31 GMT http://www.nitrc.org/forum/forum.php?forum_id=8699 Version 3.1 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a minor release for the ISMRM conference with a focus on new relaxometry and registration tools published there. Changes include (but are not limited to): <br /> <br /> - New multi-compartment T2 and myelin water fraction estimation tool with fixed Gaussian PDF parameters from relaxometry sequences<br /> - Addition of a new transformation type for linear registration: constrained affine transformation along a direction. Also better default initialization testing, and closest rigid transformation export<br /> - Addition of a NODDI compartment to MCM estimation<br /> - Faster MCM estimation, more optimization algorithms available<br /> - Correct rare errors in DTI and MCM registration algorithms<br /> - Other minor bug corrections/evolutions<br /> <br /> Binary release download link: https://www.nitrc.org/frs/?group_id=973<br /> Source code link (and documentation wiki): https://github.com/Inria-Visages/Anima-Public Anima Olivier Commowick Wed, 20 Jun 2018 2:52:51 GMT http://www.nitrc.org/forum/forum.php?forum_id=8448 Version 3.0 of Anima, a set of ITK/VTK based libraries and multi-platform command line tools for medical image analysis (image registration, EPI distortion correction, statistical analysis, diffusion imaging, quantitative MRI processing, image denoising and segmentation tools), has been released ! This is a major release with a focus on relaxometry tools, changes include (but are not limited to): <br /> <br /> - New T2 and B1 estimation of mono-component T2 relaxation times from relaxometry sequences<br /> - New multi-compartment T2 and myelin water fraction estimation tools from relaxometry sequences<br /> - Update tractography algorithms (probabilistic tractography does not use DWI images anymore, output compatible with medInria 3.0)<br /> - Add Taquet et al similarity metrics for multi-tensors registration<br /> - Correct border handling errors in DTI and MCM registration algorithms<br /> - Add isosurface extraction tool from binary segmentation<br /> - Correct rare errors in DTI estimation filter<br /> - Update Eddy current experimental tool to handle well movement correction and distortion (the first one being applied to gradients, not the second one)<br /> - Other minor bug corrections/evolutions<br /> <br /> Binary release download link: https://www.nitrc.org/frs/?group_id=973<br /> Source code link (and documentation wiki): https://github.com/Inria-Visages/Anima-Public Anima Olivier Commowick Mon, 02 Apr 2018 4:49:29 GMT