Dear Pierre:

I am using /bin/bash all the time ans PSOM works well.

How about PSOM in /bin/tcsh & /bin/csh environment?

Have you tested before?

Best Regards

Zaixu

Hi Zaixu,

Good question. I have used PSOM for years on a csh system, but I haven't made much tests recently (since 0.9). I don't see any major potential issues, as I have been quite careful to keep all scripts explicitely #!/bin/bash , but I am not 100% sure it will work. If you run into any issue let me know (remember to run psom_config) and we'll fix it right away. Those additional tests would be really helpful as we're aiming at releasing PSOM 1.0 in the coming weeks.

Best,

Pierre

Dear Pierre:
 
In fact, I have run into error in /bin/tcsh environment.
 
I define a job named 'dcm2nii_dwi_00001', then PSOM created a script named 'dcm2nii_dwi_00001.sh'.
 
The command in this script is:
"/opt/software/matlabR2010b/bin/matlab" -nosplash -nodesktop -r "load('/data/node1/Zaixu/225/logs//PIPE.mat','path_work'), if ~ismember(path_work,{'gb_niak_omitted','gb_psom_omitted'}), path(path_work), end, psom_run_job('/data/node1/Zaixu/225/logs//dcm2nii_dwi_00001.mat'),exit" >"/data/node1/Zaixu/225/logs//dcm2nii_dwi_00001.log" 2>&1
 
This command cannot work in /bin/tcsh & /bin/csh environment.
The error is 'Ambiguous output redirect.'
 
It seemd the error is in     '>"/data/node1/Zaixu/225/logs//dcm2nii_dwi_00001.log" 2>&1'.
 
Thanks very much.
 
Best Regards.
 
Zaixu
 
    

Dear Pierre:
 
I'm sorry.
 
PSOM work well in /bin/tcsh.
 
It's my fault.
 
PSOM is powerful, I should modify my code now.
 
Thanks very much.
 
Zaixu

Dear Zaixu,

haha, I was running tests on tcsh and could not reproduce the errors. Thanks for all the feedback it's fantastic, it seems like we're close to being ready for PSOM 1.0

Best,

Pierre