sdm-help-list > "Compressed file 'pp_(null).nii.gz' not found
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Apr 25, 2016 02:04 PM | Nobody
"Compressed file 'pp_(null).nii.gz' not found
Dear Joaquim, dear all,
I am running SDM on my MacOS X El Capitan in the terminal. As you advised on your homepage, I gave execution permission to the files sdm_mac and imgcalc. I also gave execution permission to all files in the mac64 folder. Unfortunately, when I try to start the pre-processing with your tutorial data, the calculations stops and then I always get this message:
"WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors."
Could you help me on that?
Thanks,
Franzi
I am running SDM on my MacOS X El Capitan in the terminal. As you advised on your homepage, I gave execution permission to the files sdm_mac and imgcalc. I also gave execution permission to all files in the mac64 folder. Unfortunately, when I try to start the pre-processing with your tutorial data, the calculations stops and then I always get this message:
"WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors."
Could you help me on that?
Thanks,
Franzi
Jun 22, 2016 02:06 PM | Joaquim Radua
RE: "Compressed file 'pp_(null).nii.gz' not found
Dear Franzi,
I am sorry for this bug. We expect to release soon a new OSX version which hopefully will overcome this issue.
With the best regards,
I am sorry for this bug. We expect to release soon a new OSX version which hopefully will overcome this issue.
With the best regards,
Nov 21, 2016 07:11 PM | Claudio Gentili
RE: "Compressed file 'pp_(null).nii.gz' not found
Hi,
we have the same problem with the 5.141 version both for MAC and win.
I've run another meta-analysis on my mac and it worked.
we have the same problem with the 5.141 version both for MAC and win.
I've run another meta-analysis on my mac and it worked.
Nov 22, 2016 08:11 AM | Anton Albajes-Eizagirre - FIDMAG - Germanes Hospitalaries
RE: "Compressed file 'pp_(null).nii.gz' not found
Dears Claudio, Franzi,
Could you please attach a copy of the 'Execution log'? You'll find it on the Tools menu.
Best,
Anton
Could you please attach a copy of the 'Execution log'? You'll find it on the Tools menu.
Best,
Anton
Nov 22, 2016 12:11 PM | Claudio Gentili
RE: "Compressed file 'pp_(null).nii.gz' not found
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aPreprocessing Monte Carlo permutation 1 of 1
WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors.
aRemoving previous permutations
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aCalling web browser to display the report
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About to execute: s_exec: "/Users/claudiogentili/Downloads/SdmGui-OSX/sdmGui.app/Contents/Resources/sdm/bin/OSX/sdm_core" pp_start 1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "/Users/claudiogentili/Downloads/SdmGui-OSX/sdmGui.app/Contents/Resources/sdm/bin/OSX/sdm_core" pp_rand 1,1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "/Users/claudiogentili/Downloads/SdmGui-OSX/sdmGui.app/Contents/Resources/sdm/bin/OSX/sdm_core" pp_end 1,gray_matter,1.000000,20.000000,gray_matter
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aPreprocessing Monte Carlo permutation 1 of 1
WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors.
aRemoving previous permutations
o
aCalling web browser to display the report
o
d
About to execute: s_exec: "/Users/claudiogentili/Downloads/SdmGui-OSX/sdmGui.app/Contents/Resources/sdm/bin/OSX/sdm_core" pp_start 1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "/Users/claudiogentili/Downloads/SdmGui-OSX/sdmGui.app/Contents/Resources/sdm/bin/OSX/sdm_core" pp_rand 1,1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "/Users/claudiogentili/Downloads/SdmGui-OSX/sdmGui.app/Contents/Resources/sdm/bin/OSX/sdm_core" pp_end 1,gray_matter,1.000000,20.000000,gray_matter
Nov 22, 2016 02:11 PM | Anton Albajes-Eizagirre - FIDMAG - Germanes Hospitalaries
RE: "Compressed file 'pp_(null).nii.gz' not found
Hi Claudio,
Where is the data located? Can you check if there are spaces in the path to the data?
Where is the data located? Can you check if there are spaces in the path to the data?
Nov 22, 2016 06:11 PM | Claudio Gentili
RE: "Compressed file 'pp_(null).nii.gz' not found
Hi Anton,
actually there was a space in the path, but I deleted it and it still does not work (same error)
here is the path:
/Users/claudiogentili/Documents/Nuovacartella
tnx
Claudio
actually there was a space in the path, but I deleted it and it still does not work (same error)
here is the path:
/Users/claudiogentili/Documents/Nuovacartella
tnx
Claudio
Dec 31, 2016 01:12 AM | Hua Yu
RE: "Compressed file 'pp_(null).nii.gz' not found
Dear Franzi,
Had your problems been solved yet? I came across the same problem, and I want to figure it out. If you solved this successfully, could you please tell me the solutions.
Best!
Hua
Had your problems been solved yet? I came across the same problem, and I want to figure it out. If you solved this successfully, could you please tell me the solutions.
Best!
Hua
Dec 31, 2016 06:12 PM | Hua Yu
RE: "Compressed file 'pp_(null).nii.gz' not found
Dear all,
Sorry. I just want to make some supplements that this problem appeared when I was analyzing the voxel based FA study. When I preprocessed other modalities, there seemed to be no problems and worked successfully. So I have no idea about this phenomenon. Hope I explain this issue clearly.
Looking forward for your reply. Sincerely!
Hua
Sorry. I just want to make some supplements that this problem appeared when I was analyzing the voxel based FA study. When I preprocessed other modalities, there seemed to be no problems and worked successfully. So I have no idea about this phenomenon. Hope I explain this issue clearly.
Looking forward for your reply. Sincerely!
Hua
Jan 17, 2017 10:01 AM | Anton Albajes-Eizagirre - FIDMAG - Germanes Hospitalaries
RE: "Compressed file 'pp_(null).nii.gz' not found
Dear Claudio, Hua,
Sorry for the late response, I've been traveling for quite a long time.
Could you paste the whole execution log? (A preprocessing execution should start with a line 'aAnalyzing coordinates').
Also, in case we aren't able to solve the problem, if any of you two wouldn't mind sending us the meta-analysis data, we could try to reproduce the error and find the source.
Best,
Anton
Sorry for the late response, I've been traveling for quite a long time.
Could you paste the whole execution log? (A preprocessing execution should start with a line 'aAnalyzing coordinates').
Also, in case we aren't able to solve the problem, if any of you two wouldn't mind sending us the meta-analysis data, we could try to reproduce the error and find the source.
Best,
Anton
Mar 22, 2017 04:03 PM | Gabriele Serena - Padova University
RE: "Compressed file 'pp_(null).nii.gz' not found
Hi all, I'm Gabriele and I have the same problem. Just before the
end of the pre-processing, it appears the Warning Message
"Compressed file 'pp_(null).nii.gz' not found". And if I want to
process further analiysis (like Mean and Linear Model), the
feedback error is exactly the same. Here below I post you all the
Log launched
Launching Preprocessing...
Launched: sdm pp gray matter, 1, 20, gray matter, 1
Analyzing coordinates
Creating anisotropic space
Preprocessing studies
Preprocessing Monte Carlo permutation
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Removing previous permutations
Calling web browser
Pre-processing finished!
_________________________________________________________
Launching Mean...
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Saving
WARNING: Compressed file 'MyMean_z.nii.gz' not found.
_________________________________________________________
Launching Lm...
_________________________________________________________
Launching Linear model...
Launched: sdm MyTwoGroups = lm
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Saving
WARNING: Compressed file 'MyTwoGroups_z.nii.gz' not found.
Thanks all
Launching Preprocessing...
Launched: sdm pp gray matter, 1, 20, gray matter, 1
Analyzing coordinates
Creating anisotropic space
Preprocessing studies
Preprocessing Monte Carlo permutation
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Removing previous permutations
Calling web browser
Pre-processing finished!
_________________________________________________________
Launching Mean...
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Saving
WARNING: Compressed file 'MyMean_z.nii.gz' not found.
_________________________________________________________
Launching Lm...
_________________________________________________________
Launching Linear model...
Launched: sdm MyTwoGroups = lm
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Saving
WARNING: Compressed file 'MyTwoGroups_z.nii.gz' not found.
Thanks all