Hi, as I was running a MATLAB batch script to run CONN toolbox, I kept running into the following error during preprocessing (with spm12): 

Conversion Segment -> Old Segment
Item 'Source Image', field 'val': Number of matching files (0) less than required (1).
Conversion Normalise:Write -> Old Normalise:Write
Conversion Normalise:EstWrite -> Old Normalise:EstWrite
Item 'Source Image', field 'val': Number of matching files (0) less than required (1).
Item 'Images to Write', field 'val': Number of matching files (0) less than required (1).
{Error using spm_jobman>fill_run_job (line 474)
No executable modules, but still unresolved dependencies or incomplete module
inputs.
Error in spm_jobman (line 246)
sts = fill_run_job('run', cjob, varargin{3:end});
Error in conn_setup_wizard (line 186)
spm_jobman('run',matlabbatch);
Error in conn_batch (line 160)
conn_setup_wizard(OPTIONS);
Error in Taiji_Batch_062116_2 (line 257)
conn_batch(batch);
}
474 error('spm:spm_jobman:jobNotFilled', 'No executable modules, but still unresolved dependencies or incomplete module inputs.');
K>>

Does anyone have any insights on what might be going on and how to fix this?
Thank you!

Hi Alfonso,

Thank you for your prompt reply. Hoping that I am on the same page as you, I have edited the script by deleting the batch.New sections of my script and have replaced them with batch.Setup syntax (similar to the script in conn_batch_workshop_nyudataset.m from the Downloads link). However, I am now getting a new error message:

{ Undefined function 'spm_matlab_version_chk' for input arguments of type 'char'.
Error in conn_process>savefields (line 2954)
if spm_matlab_version_chk('7') >= 0
Error in conn_process (line 143)
savefields(conn_prepend('',deblank(CONN_x.Setup.structural{nsub}{1}),'_seg_sn.mat'),sn);
Error in conn_process (line 11)
case 'setup', disp(['CONN: RUNNING SETUP STEP']);
conn_process([0:5]);
Error in conn_batch (line 326)
conn_process Setup;

Do you happen to know the best way to resolve this problem?
Thank you!

Hi Alfonso,

Thank you for your help! I've downloaded the latest CONN release and rewrote my script using the nyudataset script as an example for analyzing between-session differences. However, while preprocessing seems to be working for the most part, I am now running into a new error. After a new analysis mask file (art_mask.img) was saved to the the first subject's 1st session folder, I'm running into an error message that says the following:

" {Error using figure
This functionality is no longer supported under the -nojvm startup option.
For
more information, see "Changes to -nojvm Startup Option" in the MATLAB Release
Notes.
To view the release note in your system browser, run
web('http://www.mathworks.com/help/matlab/release-notes.html#btsurqv-6',
'-browser').

Error in matlab.hg.internal.openfigLegacy (line 120)
figure(fig(i));
Error in gui_mainfcn>local_openfig (line 286)
gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton, visible);
Error in gui_mainfcn (line 233)
gui_hFigure = local_openfig(gui_State.gui_Name,
'reuse',gui_Visible);
Error in art (line 143)
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
Error in conn_art (line 8)
[varargout{1:nargout}]=art(varargin{:});
Error in conn_setup_preproc (line 1066)
h=conn_art('sess_file',matlabbatch{n}.art);
Error in conn_process (line 23)
case 'setup_preprocessing', disp(['CONN: RUNNING
SETUP.PREPROCESSING STEP']);
conn_setup_preproc(varargin{:});
Error in conn_batch (line 670)
conn_process('setup_preprocessing',steps,'subjects',SUBJECTS,OPTIONS{:});
Error in practice2 (line 113)
conn_batch(batch);
}
>> "

Would it be possible for you to take a quick look at my script to see if maybe there were errors in the script that may be causing this/if you have any suggestions on resolving this issue?

Thank you so much!

Hi Alfonso, thank you so much for your help! Everything seems to be running well, but I am now getting the following error message when I run the batch script. What is the best way to resolve this? Thanks!

Step 5/5: Preparing second-level ROI analyses
16.7%
(Subject 1 Condition 1)33.3%
(Subject 2 Condition 1)50.0%
(Subject 1 Condition 2)66.7%
(Subject 2 Condition 2)83.3%
(Subject 1 Condition 3)100.0%
(Subject 2 Condition 3)

ERROR DESCRIPTION:
Error using figure
Width and height must be > 0
Error in conn (line 86)
CONN_h.screen.hfig=figure('units','pixels','position',[0*72+1,h0(2)-max(minheight,.5*h0(1))-48,h0(1)-0*72-1,max(minheight,.5*h0(1))],'color',CONN_gui.backgroundcolor,'doublebuffer','on','tag',connversion{1},'name',tname,'numbertitle','off','menubar','none','resize','on','colormap',CONN_h.screen.colormap,'closerequestfcn',@conn_closerequestfcn,'deletefcn',@conn_deletefcn,'resizefcn',@conn_resizefcn,'interruptible','off');
Error in practice2 (line 94)
conn
CONN v.16.b
SPM12 + DEM FieldMap MEEGtools
Matlab v.2014a
storage: 55154.4Gb available
ERROR DESCRIPTION:
Reference to non-existent field 'menus'.
Error in conn (line 4584)
state=find(conn_menumanager(CONN_h.menus.m_results_03,'state'));
Error in practice2 (line 96)
conn gui_results
CONN v.16.b
SPM12 + DEM FieldMap MEEGtools
Matlab v.2014a
storage: 55154.4Gb available