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Jul 7, 2016 08:07 AM | Daniele Tolomeo
Mouse brain surface
Dear all,
I would like to test BrainNet Viewer on mouse fMRI connectivity data. I'm trying to create the .nv surface file but I've not understood hot to create it. I've been able to transform the brain mask to a surface one having .vtk extention (attached). Can you please tell me how to create it ?
Thank you very much indeed,
Daniele
I would like to test BrainNet Viewer on mouse fMRI connectivity data. I'm trying to create the .nv surface file but I've not understood hot to create it. I've been able to transform the brain mask to a surface one having .vtk extention (attached). Can you please tell me how to create it ?
Thank you very much indeed,
Daniele
Jul 30, 2016 09:07 AM | Mingrui Xia
RE: Mouse brain surface
Hi Daniele,
Please try the attached function. An example in matlab can be "BrainNet_vtk2nv('masksum_thr.nii.vtk','test.nv')"; However, I'm not sure if the XYZ axis is right for your nii file. You can send me the nifti file for testing. Also, you can use the function BrainNet_GenSurface.m to generate the surface file directly.
Best,
Mingrui
Please try the attached function. An example in matlab can be "BrainNet_vtk2nv('masksum_thr.nii.vtk','test.nv')"; However, I'm not sure if the XYZ axis is right for your nii file. You can send me the nifti file for testing. Also, you can use the function BrainNet_GenSurface.m to generate the surface file directly.
Best,
Mingrui