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help > RE: Creating mask in advanced mode with different
Nov 24, 2014 07:11 PM | Benjamin Wagner - UT Southwestern Medical Center
RE: Creating mask in advanced mode with different
Hi Venkata,
Pickatlas uses nifti files. Nifti files DO NOT store colors. Colors are given in whatever program you may use to view the nifti image by applying a colormap.
That being said, the way to get different "colors" is to use the "Write Independent Regions" checkbox (just above the save option in the middle column). However, the way you have your Region defined in the attached image would still show as one "color" as it is all grouped together. You would need to create a region for the Caudate and one for the Putamen.
Hope this helps,
Ben
Originally posted by venkata chaitanya chirumamilla:
Pickatlas uses nifti files. Nifti files DO NOT store colors. Colors are given in whatever program you may use to view the nifti image by applying a colormap.
That being said, the way to get different "colors" is to use the "Write Independent Regions" checkbox (just above the save option in the middle column). However, the way you have your Region defined in the attached image would still show as one "color" as it is all grouped together. You would need to create a region for the Caudate and one for the Putamen.
Hope this helps,
Ben
Originally posted by venkata chaitanya chirumamilla:
Hi WFU Pick atlas users,
I want to create a mask with different colors for different regions. For example in the attached file i want to have one color for regions (Caudate_L, caudate_R) and another different color for regions(Putamen_L, Putamen_R). Is it possible to create the above mentioned mask using WFU_Pickatlas?.
Thank you so much for your help.
I want to create a mask with different colors for different regions. For example in the attached file i want to have one color for regions (Caudate_L, caudate_R) and another different color for regions(Putamen_L, Putamen_R). Is it possible to create the above mentioned mask using WFU_Pickatlas?.
Thank you so much for your help.
Threaded View
| Title | Author | Date |
|---|---|---|
| venkata chaitanya chirumamilla | Nov 24, 2014 | |
| Benjamin Wagner | Nov 24, 2014 | |
| venkata chaitanya chirumamilla | Nov 25, 2014 | |