open-discussion
open-discussion > RE: Secondorder motion correction errors
Apr 7, 2015 12:04 AM | Gabe Castillo
RE: Secondorder motion correction errors
I have pasted the output it generates below.
ErrMessage =
ErrMessage =
''
InfoOut =
RootName:
'213_PDF.PCOG14.WMEM1.slicemocoxy_afni+orig'
DATASET_RANK: [3 240 0 0 0 0 0 0]
BRICK_TYPES: [1x240 double]
BYTEORDER_STRING: 'LSB_FIRST'
ORIENT_SPECIFIC: [0 3 5]
ORIGIN: [-114.8830 -130.5460 78.9731]
DELTA: [4 4 -4]
SCENE_DATA: [0 2 0 -999 -999 -999 -999 -999]
TYPESTRING: '3DIM_HEAD_ANAT'
TAXIS_NUMS: [240 37 77002 -999 -999 -999 -999 -999]
TAXIS_FLOATS: [0 2 0 78.9731 -4 -999999 -999999 -999999]
TAXIS_OFFSETS: [1x37 double]
IDCODE_DATE: 'Mon Apr 6 16:23:18 2015'
HISTORY_NOTE: '[gabe@chile: Mon Apr 6 10:44:21 2015] to3d -pref...'
IJK_TO_DICOM_REAL: [4 0 0 -114.8830 0 4 0 -130.5460 0 0 -4 78.9731]
LABEL_1: 'zyxt'
LABEL_2: 'zyxt'
DATASET_NAME: 'zyxt'
WORSLEY_DF: []
WORSLEY_NCONJ: []
WORSLEY_FWHM: []
TypeName: 'short'
TypeBytes: 2
ByteOrder: 'ieee-le'
Orientation: [3x2 char]
FileFormat: 'BRIK'
Extension_1D: ''
DATASET_DIMENSIONS: [64 64 37 0 0]
BRICK_FLOAT_FACS: [1x240 double]
BRICK_STATS: [1x480 double]
DATASET_RANK: [3 240 0 0 0 0 0 0]
BRICK_TYPES: [1x240 double]
BYTEORDER_STRING: 'LSB_FIRST'
ORIENT_SPECIFIC: [0 3 5]
ORIGIN: [-114.8830 -130.5460 78.9731]
DELTA: [4 4 -4]
SCENE_DATA: [0 2 0 -999 -999 -999 -999 -999]
TYPESTRING: '3DIM_HEAD_ANAT'
TAXIS_NUMS: [240 37 77002 -999 -999 -999 -999 -999]
TAXIS_FLOATS: [0 2 0 78.9731 -4 -999999 -999999 -999999]
TAXIS_OFFSETS: [1x37 double]
IDCODE_DATE: 'Mon Apr 6 16:23:18 2015'
HISTORY_NOTE: '[gabe@chile: Mon Apr 6 10:44:21 2015] to3d -pref...'
IJK_TO_DICOM_REAL: [4 0 0 -114.8830 0 4 0 -130.5460 0 0 -4 78.9731]
LABEL_1: 'zyxt'
LABEL_2: 'zyxt'
DATASET_NAME: 'zyxt'
WORSLEY_DF: []
WORSLEY_NCONJ: []
WORSLEY_FWHM: []
TypeName: 'short'
TypeBytes: 2
ByteOrder: 'ieee-le'
Orientation: [3x2 char]
FileFormat: 'BRIK'
Extension_1D: ''
DATASET_DIMENSIONS: [64 64 37 0 0]
BRICK_FLOAT_FACS: [1x240 double]
BRICK_STATS: [1x480 double]
err =
0
2nd order Moco Done!
< M A T L A B (R) >
Copyright 1984-2014 The MathWorks, Inc.
R2014a (8.3.0.532) 64-bit (glnxa64)
February 11, 2014
Copyright 1984-2014 The MathWorks, Inc.
R2014a (8.3.0.532) 64-bit (glnxa64)
February 11, 2014
To get started, type one of these:
helpwin, helpdesk, or demo.
For product information, visit http://www.mathworks.com.
For product information, visit http://www.mathworks.com.
>> using 37 slices, TR=2.000000
seconds
tdim =
240
zdim =
37
non-sensical or unsupported slice
acquisition order inputted:
slice_acq_order =
3
Error in read_slicemocoxy_AFNI_files_auto
(line 8)
if (exist('moco_folder')==0)
if (exist('moco_folder')==0)
Output argument "inplane" (and maybe
others) not assigned during call to
"/usr/local/slomoco/read_slicemocoxy_AFNI_files_auto.m>read_slicemocoxy_AFNI_files_auto".
"/usr/local/slomoco/read_slicemocoxy_AFNI_files_auto.m>read_slicemocoxy_AFNI_files_auto".
Error in qa_slomoco (line 56)
[inplane,inplane6]=read_slicemocoxy_AFNI_files_auto(filestr_in,slice_timing);
[inplane,inplane6]=read_slicemocoxy_AFNI_files_auto(filestr_in,slice_timing);
>> *+ WARNING: If you are performing
spatial transformations on an oblique dset,
such as 213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK is 14.743005 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as 213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK is 14.743005 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as 213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK is 14.743005 degrees from plumb.
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Feb 9 2015) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset 213_PDF.PCOG14.WMEM1.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Feb 9 2015) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset 213_PDF.PCOG14.WMEM1.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Feb 9 2015) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset 213_PDF.PCOG14.WMEM1.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
such as 213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK is 14.743005 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as 213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK is 14.743005 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as 213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:213_PDF.PCOG14.WMEM1_pestica/213_PDF.PCOG14.WMEM1+orig.BRIK is 14.743005 degrees from plumb.
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Feb 9 2015) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset 213_PDF.PCOG14.WMEM1.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Feb 9 2015) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset 213_PDF.PCOG14.WMEM1.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Feb 9 2015) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset 213_PDF.PCOG14.WMEM1.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
Threaded View
Title | Author | Date |
---|---|---|
Gabe Castillo | Apr 6, 2015 | |
Gabe Castillo | Apr 7, 2015 | |
Erik Beall | Apr 9, 2015 | |
Gabe Castillo | Apr 11, 2015 | |
Gabe Castillo | Apr 7, 2015 | |