Hi again,

While no errors were printed from running the following command:

shapeAnalysisMANCOVA ../abnormalhead_procalign_inputlist.csv --columnGroupTypes 0 --infileColumn 2 -n 1000 --testColumn 0

The only output is a meta file for each participant of the second group (prefix to meta file is identical to prefix of vtk file for each subject in the second group).

My input list file is again attached. The exact text returned from the command is copy and pasted below.

Many thanks in advance for the continued help,
Lara

kristen@kristen-VirtualBox:~/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS$ sudo shapeAnalysisMANCOVA ../abnormalhead_procalign_inputlist.csv --columnGroupTypes 0 --infileColumn 2 -n 1000 --testColumn 0
 input file specified: ../abnormalhead_procalign_inputlist.csv
filename: ../abnormalhead_procalign_inputlist.csv numIndependent: 0
Num Subjects: 20


data in group_type 0 has been relabeled: 0 --> group A = -1 ; 1 --> group B = 1
#(A)= 10; #(B)= 10
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17011.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 6.92081e-310
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17012.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 6.92081e-310
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17013.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 2.37152e-322
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17014.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 2.37152e-322
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17015.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 1.43808e-316
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17016.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 4.94066e-324
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17018.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 2.122e-314
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17019.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 9.21755e+227
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17020.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk -1 4.74303e-322
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17010.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 3.16202e-322
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17011.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 1.43808e-316
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17012.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 1.13635e-322
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17013.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 2.122e-314
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17014.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 2.1612e+185
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17015.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 9.20546e+179
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17016.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 3.66388e-307
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17018.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 1.72632e-306
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17019.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 4.79244e-322
/home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17020.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk 1 1.43805e-316
 -1 1.43809e-316
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17011.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17012.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17013.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17014.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk

reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17015.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17016.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17018.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17019.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17020.1_Lhipp_surf_reorient_abnormalhead_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17010.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17011.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17012.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17013.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17014.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17015.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17016.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17018.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17019.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh /home/kristen/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS/17020.1_Lhipp_surf_reorient_original_round2SPHARM_procalign.vtk - .vtk
reading Mesh  -   - kristen@kristen-VirtualBox:~/Desktop/QA_TESTING/ABNORMAL_HEAD/STATS$