Hi Martin,

Thanks for the prompt response. Here is how I ran ShapeAnalysisModule:
ShapeAnalysisModule --sx 0.5 --sy 0.5 --sz 0.5 --label 1 --NumberofIterations 1000 --SubdivLevelValue 10 --SPHARMDegreeValue 15 --flipTemplate None --regTemplate None --MTemplate --paraOutTemplate InputFile_ShapeAnalaysis_4data.csv test/out

and I ran the individual calls like this:

SegPostProcessCLP data/mydata_groupA_1.gipl.gz test/1/Mesh/PostProcess/mydata_postprocessed_1.gipl.gz --space 0.5,0.5,0.5

GenParaMeshCLP --EulerFile --outEulerName test/1/EulerFiles/mydata_1_euler.txt --iter 1000 --label 1 test/1/Mesh/PostProcess/mydata_postprocessed_1.gipl.gz test/1/Mesh/SPHARM/mydata_postprocessed_1_para.vtk test/1/Mesh/SPHARM/mydata_postprocessed_1_surf.vtk

ParaToSPHARMMeshCLP --medialMesh --paraOut --phiIteration 100 --thetaIteration 100 --spharmDegree 15 --subdivLevel 10 test/1/Mesh/SPHARM/mydata_postprocessed_1_para.vtk test/1/Mesh/SPHARM/mydata_postprocessed_1_surf.vtk test/1/Mesh/SPHARM/mydata_postprocessed_1_surf

Regarding the csv file. I have changed the tutorial sample data csv regarding my new data. I have attached the file as well.
I really appreciate your time and help.

Thanks,
Azar