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Oct 31, 2015 09:10 PM | Erik Duboue
Group registration error
Hi:
I am trying to run a group registration of 6 multi-photon confocal stacks, and I am getting an error I have not received before. I am running on an Ubuntu 10.13 16-core processor sever. Pairwise registration seems to run fin
After the error, I went back and made the command as basic as possible:
groupwise_init -O outputfile/initial -v --align-centers-of-mass image1.nrrd image 2.nrrd image3.nrrd image 4.nrrd image5.nrrd image6.nrrd
The error I get is as follows:
Template grid is 1817 x 2561 x 780 pixels of size 0.610000 x 0.610000 x 0.610000
Reformating output images
Caught signal 11, faulty address is (nil)
[stack] Execution path:
[stack] groupwise_init(cmtkStackBacktraceSignalHandler+0x55) [0x591008]
[stack] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfbb0) [0x7f070fd16bb0]
[stack] groupwise_init(_ZN4cmtk13TemplateArrayIhE12SetPaddingAtEm+0x4a) [0x55bd02]
[stack] groupwise_init(_ZN4cmtk14ReformatVolume13PlainReformatEv+0x603) [0x4de8b9]
[stack] groupwise_init(_ZN4cmtk27GroupwiseRegistrationOutput17WriteAverageImageEPKcNS_13Interpolators17InterpolationEnumEb+0x677) [0x4dca23]
[stack] groupwise_init(_Z6doMainiPPKc+0x1181) [0x4c6cce]
[stack] groupwise_init(main+0x31) [0x4c7422]
[stack] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7f070eb0ade5]
[stack] groupwise_init() [0x4c5a89]
ERROR: could not find file groupwise/initial/groupwise_init.xforms
ERROR: could not open file "groupwise/affine/groupwise_rmi.xforms" with mode "r"
Input archive groupwise/affine/groupwise_rmi.xforms could not be opened for reading.
Has anyone run into this error before?
Thanks!
NOTE: the commands are running in a bash script so hence the reason for the:
ERROR: could not find file groupwise/initial/groupwise_init.xforms
ERROR: could not open file "groupwise/affine/groupwise_rmi.xforms" with mode "r"
Input archive groupwise/affine/groupwise_rmi.xforms could not be opened for reading.
messages.
I am trying to run a group registration of 6 multi-photon confocal stacks, and I am getting an error I have not received before. I am running on an Ubuntu 10.13 16-core processor sever. Pairwise registration seems to run fin
After the error, I went back and made the command as basic as possible:
groupwise_init -O outputfile/initial -v --align-centers-of-mass image1.nrrd image 2.nrrd image3.nrrd image 4.nrrd image5.nrrd image6.nrrd
The error I get is as follows:
Template grid is 1817 x 2561 x 780 pixels of size 0.610000 x 0.610000 x 0.610000
Reformating output images
Caught signal 11, faulty address is (nil)
[stack] Execution path:
[stack] groupwise_init(cmtkStackBacktraceSignalHandler+0x55) [0x591008]
[stack] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfbb0) [0x7f070fd16bb0]
[stack] groupwise_init(_ZN4cmtk13TemplateArrayIhE12SetPaddingAtEm+0x4a) [0x55bd02]
[stack] groupwise_init(_ZN4cmtk14ReformatVolume13PlainReformatEv+0x603) [0x4de8b9]
[stack] groupwise_init(_ZN4cmtk27GroupwiseRegistrationOutput17WriteAverageImageEPKcNS_13Interpolators17InterpolationEnumEb+0x677) [0x4dca23]
[stack] groupwise_init(_Z6doMainiPPKc+0x1181) [0x4c6cce]
[stack] groupwise_init(main+0x31) [0x4c7422]
[stack] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7f070eb0ade5]
[stack] groupwise_init() [0x4c5a89]
ERROR: could not find file groupwise/initial/groupwise_init.xforms
ERROR: could not open file "groupwise/affine/groupwise_rmi.xforms" with mode "r"
Input archive groupwise/affine/groupwise_rmi.xforms could not be opened for reading.
Has anyone run into this error before?
Thanks!
NOTE: the commands are running in a bash script so hence the reason for the:
ERROR: could not find file groupwise/initial/groupwise_init.xforms
ERROR: could not open file "groupwise/affine/groupwise_rmi.xforms" with mode "r"
Input archive groupwise/affine/groupwise_rmi.xforms could not be opened for reading.
messages.
Threaded View
Title | Author | Date |
---|---|---|
Erik Duboue | Oct 31, 2015 | |
Torsten Rohlfing | Nov 1, 2015 | |
Erik Duboue | Nov 1, 2015 | |
Torsten Rohlfing | Nov 5, 2015 | |
Erik Duboue | Nov 5, 2015 | |
Torsten Rohlfing | Nov 22, 2015 | |
Torsten Rohlfing | Jan 14, 2016 | |
Torsten Rohlfing | Jan 16, 2016 | |
Torsten Rohlfing | Nov 6, 2015 | |
Torsten Rohlfing | Nov 3, 2015 | |