Hi,

I have a really simple question that I seem unable to go past (I am an absolute beginner). I have run a Lesion-Toads in MIPAV on an MS brain so that I have now two nifti files - 1) a lesion mask, 2) hard segmentation results (I can get all volume statistics from all 25 coded regions so I assume everything went fine). The problem I have is that I would like to get the following images:

1) Color-coded hard segmentation i.e. with lesions marked in red, WH in white etc.
2) FLAIR image with lesions superimposed on it
3) 3D reconstruction of the lesions against a brain background.

PS. How can I open the .input file type?

Thank  you in advance.
Lukasz