Hello all,

Thank you for your input in advance. We do DTI processing using FSL. But as of late I have been wanting to try out DTIPrep at least for some steps in our usual processing pipeline. I installed the Mac OSx DTIprep package and can use the gui. However, I am having hard time calling commands through command line in the mac terminal (I suspect that is because there path set up). I would appreciate any help with command line installation of the program (I am versatile enough with shell scripting to set a path, and did so for FSL and Freesurfer. I can't locate any instructions for how to set similar paths for DTIPrep). Please, let me know if you would like me to clarify the question.

Regards,
Adnan