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help > RE: preprocessing
Jan 17, 2017 11:01 PM | Jeffrey Spielberg
RE: preprocessing
Hi Hannah,
It would be hard to use the mask script, as the script needs FSL-style warp data (needed to warp MNI152-standard-space masks to anatomical space). You could do the same type of thing as the script. Basically, you would need to:
1. Segment the anatomical
2. Warp standard masks of ventricles and white matter from MNI152 space to anatomical space
3. Mask the segmentation output from #1 with the warped masks from #2
Best,
Jeff
It would be hard to use the mask script, as the script needs FSL-style warp data (needed to warp MNI152-standard-space masks to anatomical space). You could do the same type of thing as the script. Basically, you would need to:
1. Segment the anatomical
2. Warp standard masks of ventricles and white matter from MNI152 space to anatomical space
3. Mask the segmentation output from #1 with the warped masks from #2
Best,
Jeff
Threaded View
Title | Author | Date |
---|---|---|
Jeff Peters | Jan 9, 2017 | |
hnh | Jan 11, 2017 | |
Jeffrey Spielberg | Jan 11, 2017 | |
Jeff Peters | Jan 13, 2017 | |
hnh | Jan 16, 2017 | |
Jeffrey Spielberg | Jan 17, 2017 | |
hnh | Jan 23, 2017 | |
Jeffrey Spielberg | Jan 26, 2017 | |
hnh | Jan 30, 2017 | |
Jeff Peters | Jan 19, 2017 | |
Jeffrey Spielberg | Jan 17, 2017 | |