open-discussion
open-discussion > RE: Atlas File - No Lesion - T1 Only
Mar 2, 2017 03:03 PM | Sneha Pandya
RE: Atlas File - No Lesion - T1 Only
Dear Ankita,
Thank you for your response. I am not able to succeed until I choose *.txt file as it gives me an error that no atlas has been chosen. If I select with lesions option can you please suggect which *txt files in Atlas to use for Atlas file with lesions, no lesion T1 and flair and no lesion T1 only?
I selected following .txt files and I do not get any output.
1. Atlas file - With lesions: /mipav/plugins/Atlas/lesionToads-atlas-2012/cruise-atlas-12obj-lesiontoads2012.tx
2. Atlas file - No lesions - T1 and Flair: /mipav/plugins/Atlas/lesionToads-atlas-2012/cruise-atlas-12obj-toads2012.txt
3. Atlas File- no lesion - T1 only: /mipav/plugins/Atlas/lesionToads-atlas-2012/cruise-atlas-12obj-toads2012.txt
For main inputs I have selected:
1. Output images: hard segmentations+memberships
2. Output max membership classification/ Correct inhomogeneity/ Output inhomogeneity field: unchecked
All I get is lesion+toads.input output.
Thanks,
Sneha
Thank you for your response. I am not able to succeed until I choose *.txt file as it gives me an error that no atlas has been chosen. If I select with lesions option can you please suggect which *txt files in Atlas to use for Atlas file with lesions, no lesion T1 and flair and no lesion T1 only?
I selected following .txt files and I do not get any output.
1. Atlas file - With lesions: /mipav/plugins/Atlas/lesionToads-atlas-2012/cruise-atlas-12obj-lesiontoads2012.tx
2. Atlas file - No lesions - T1 and Flair: /mipav/plugins/Atlas/lesionToads-atlas-2012/cruise-atlas-12obj-toads2012.txt
3. Atlas File- no lesion - T1 only: /mipav/plugins/Atlas/lesionToads-atlas-2012/cruise-atlas-12obj-toads2012.txt
For main inputs I have selected:
1. Output images: hard segmentations+memberships
2. Output max membership classification/ Correct inhomogeneity/ Output inhomogeneity field: unchecked
All I get is lesion+toads.input output.
Thanks,
Sneha
Threaded View
Title | Author | Date |
---|---|---|
Sneha Pandya | Dec 27, 2016 | |
Hsiu-Wei Yang | Jun 6, 2017 | |
J Cuzzocreo | Jun 6, 2017 | |
Hsiu-Wei Yang | Jun 6, 2017 | |
J Cuzzocreo | Jun 6, 2017 | |
Hsiu-Wei Yang | Jun 13, 2017 | |
J Cuzzocreo | Jun 13, 2017 | |
Anikta sharma | Feb 10, 2017 | |
Sneha Pandya | Feb 10, 2017 | |
Anikta sharma | Feb 15, 2017 | |
Sneha Pandya | Feb 16, 2017 | |
Anikta sharma | Feb 28, 2017 | |
Sneha Pandya | Mar 2, 2017 | |