Dear Nabin,

Thank you for your interest in PANDA.

We have elaborated the data processing procedure in our paper:
http://journal.frontiersin.org/article/1...

From the original data to network construction, there are many procedures. Also, the brain network node definition is important for the final results.

All the MATLAB scripts were named as 'g_*.m' in the folder of PANDA. For example, about the brain network node definition, the function is g_IndividualParcellated.m.
About the full pipeline, you can find the g_dti_pipeline.m function. In this script, you can find the order of the full data procedures.

If you have any problems, feel free to contact me.

Best wishes
Zaixu