users
users > Unable to read reference image
Mar 13, 2017 09:03 PM | Greg Jefferis
Unable to read reference image
Dear Dan,
This is a problem specifically with the munger script. munger is quite fussy about certain input file and directory names. There are couple of odd things here:
> Reference brain stem is ref
> JOB ID =
> Start time is: 1489437302 seconds
> Root directory is /d/Data/cmtk_registration
> Changing to root directory: images_FB
> Setting image root to: images_FB
1. The reference brain stem is ref. Your reference brain is:
Nov01_2016_B3ZD.nrrd
It is better to use names without underscores. These have a special meaning for munger and things may be fragile if your names do not conform to expectations.
2. There might be a problem with the name of the directory containing your input images. It should normally be called images not images_FB.
Best,
Greg.
This is a problem specifically with the munger script. munger is quite fussy about certain input file and directory names. There are couple of odd things here:
> Reference brain stem is ref
> JOB ID =
> Start time is: 1489437302 seconds
> Root directory is /d/Data/cmtk_registration
> Changing to root directory: images_FB
> Setting image root to: images_FB
1. The reference brain stem is ref. Your reference brain is:
Nov01_2016_B3ZD.nrrd
It is better to use names without underscores. These have a special meaning for munger and things may be fragile if your names do not conform to expectations.
2. There might be a problem with the name of the directory containing your input images. It should normally be called images not images_FB.
Best,
Greg.
Threaded View
Title | Author | Date |
---|---|---|
Dan Xie | Mar 13, 2017 | |
Greg Jefferis | Mar 13, 2017 | |
Dan Xie | Mar 13, 2017 | |
Greg Jefferis | Mar 14, 2017 | |
Torsten Rohlfing | Mar 14, 2017 | |
Dan Xie | Mar 14, 2017 | |
Torsten Rohlfing | Mar 15, 2017 | |
Dan Xie | Mar 20, 2017 | |
Greg Jefferis | Mar 20, 2017 | |
Dan Xie | Mar 20, 2017 | |
Greg Jefferis | Mar 14, 2017 | |
Dan Xie | Mar 14, 2017 | |