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help > RE: Error at segmentation step
Apr 20, 2017 04:04 AM | Alfonso Nieto-Castanon - Boston University
RE: Error at segmentation step
Hi Tatyana,
Thanks for reporting this, that was a bug that we had not run into before. If you could please update to the latest release and install the attached patch (this patch is for 17c, simply copy this file to the conn distribution folder overwriting the file with the same name there) that should fix it. Let me know if you run into any issues.
Note: if you prefer to keep your current version (you are currently using a somewhat old CONN release, 15h) let me know and I will send you a specific patch for that version.
Best
Alfonso
Originally posted by Tatyana Mukhina:
Thanks for reporting this, that was a bug that we had not run into before. If you could please update to the latest release and install the attached patch (this patch is for 17c, simply copy this file to the conn distribution folder overwriting the file with the same name there) that should fix it. Let me know if you run into any issues.
Note: if you prefer to keep your current version (you are currently using a somewhat old CONN release, 15h) let me know and I will send you a specific patch for that version.
Best
Alfonso
Originally posted by Tatyana Mukhina:
Hello everyone,
I'm getting an error at the segmentation (Setup, 2/7) step while makeing a group analysis. The program creates new .nii files in structure data and shows an error message that corresponding .img file doesn't exist.
I don't know how to fix this error.
ERROR DESCRIPTION:
Error using spm_vol>spm_vol_hdr (line 80)
File "E:\Group_5\Left\Data\Akhmedov\structure\c320140701_100711BRAINSTD23s003a1001.img" does not exist.
Error in spm_vol (line 61)
v = spm_vol_hdr(deblank(P(i,:)));
Error in conn_getinfo (line 18)
V=spm_vol(filename);
Error in conn_file (line 3)
[V,str,icon,filename]=conn_getinfo(filename);
Error in conn_process (line 238)
CONN_x.Setup.rois.files{nsub}{n1}{nses}=conn_file(ffile);
Error in conn_process (line 14)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 2977)
else conn_process('setup');
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.15.h
SPM12 + DEM FieldMap MEEGtools wfupickatlas
Matlab v.2015b
storage: 93.7Gb available
Thanks.
Best,
Tatyana
I'm getting an error at the segmentation (Setup, 2/7) step while makeing a group analysis. The program creates new .nii files in structure data and shows an error message that corresponding .img file doesn't exist.
I don't know how to fix this error.
ERROR DESCRIPTION:
Error using spm_vol>spm_vol_hdr (line 80)
File "E:\Group_5\Left\Data\Akhmedov\structure\c320140701_100711BRAINSTD23s003a1001.img" does not exist.
Error in spm_vol (line 61)
v = spm_vol_hdr(deblank(P(i,:)));
Error in conn_getinfo (line 18)
V=spm_vol(filename);
Error in conn_file (line 3)
[V,str,icon,filename]=conn_getinfo(filename);
Error in conn_process (line 238)
CONN_x.Setup.rois.files{nsub}{n1}{nses}=conn_file(ffile);
Error in conn_process (line 14)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 2977)
else conn_process('setup');
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.15.h
SPM12 + DEM FieldMap MEEGtools wfupickatlas
Matlab v.2015b
storage: 93.7Gb available
Thanks.
Best,
Tatyana
Threaded View
| Title | Author | Date |
|---|---|---|
| Tatyana Mukhina | Apr 19, 2017 | |
| Tatyana Mukhina | May 3, 2017 | |
| Tatyana Mukhina | Apr 28, 2017 | |
| Alfonso Nieto-Castanon | Apr 20, 2017 | |