Wonderful, thank you for all your help.

I want to run correlation analyses as well, but since I'm missing values for some of the participants I thought I'd run it externally (in R or something). I want to extract the right values from the out_propcalc.mat file so if I load that file and look under:

out.AUC_thrmat_graph_meas

I get the following possible output:

cpl_pos_numvalsAUC: [124x1 double]
cpl_pos: [124x1 double]
cpl_pos_numvalsAUC_nodiscon: [124x1 double]
cpl_pos_nodiscon: [124x1 double]


Which one of those is the right value that would correspond to what was used in my group comparisons (Characteristic Path Length (thresholded matrices, network-wide, negative weights):)? I'm assuming one of the first two since I'm not using the no disconnected AUC calculation?

thanks,
Devon