help > RE: how to run second level analysis with batch?
May 18, 2017  02:05 PM
RE: how to run second level analysis with batch?
Hi Alfonso,

Yes that seemed to have been the problem, thank you.

However I'm having a problem now when I try to display second level results in SPM. I tried to run a couple of second level analysis using the conn gui. When there are significant voxels, and I load the resulting SPM.mat in SPM, it works fine.
However when there are no significant voxels, and I try to load the results in SPM, it takes a very long time and displays this warning message a few times on the matlab window

Warning: Returning NaN for out of range arguments
> In spm_Pcdf at 90
In spm_P_RF at 112
In spm_P at 39
In spm_list at 503
In spm_list at 136

The place where the glass brain is supposed to appear is completely black, and the statistics show a T of over 300, and a significant cluster of over 60000 voxels.
I also noticed that the mask.nii file stored in the second level analysis folder contains only ones (there are no zeros).

Best, Michael
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TitleAuthorDate
how to run second level analysis with batch?ml90May 17, 2017
      RE: how to run second level analysis with batch?Alfonso Nieto-CastanonMay 17, 2017
            RE: how to run second level analysis with batch?ml90May 18, 2017
                  RE: how to run second level analysis with batch?Alfonso Nieto-CastanonMay 22, 2017