users > RE: detect_adni_phantom missing in 2.2.2
Jul 22, 2012 11:07 PM | RE: detect_adni_phantom missing in 2.2.2 Originally posted by Junqian Xu: Also, the order of first two inputs is wrong in
the IJ paper, should be
cmtk unwarp_image_phantom --final-cp-spacing 40 --levels 2 phantom.xml phantom.nii unwarp.xform instead of cmtk unwarp_image_phantom --final-cp-spacing 40 --levels 2 phantom.nii phantom.xml unwarp.xform Boy, I was really paying attention when I wrote that paper, didn't I? ;) Thanks - I'll fix that too. btw, a separate question, what would cause
snr: inf cnr: nan nan nan inf at the beginning of the phantom.xml file Best guess - the SNR and CNR spheres were not found. In that case, the entire phantom detection is not valid. Would you mind sending me the image file that produces this result? That would be the most efficient way for me to track down what exactly is going on. In general (and I hope this is mentioned in the IJ paper at least) the phantom detection is still a bit work in progress, so things like sanity checks may still be lacking somewhat. Best, Torsten
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| Threaded View |
| Title | Author | Date |
| detect_adni_phantom missing in 2.2.2 | Junqian Xu | Jul 17, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Torsten Rohlfing | Jul 18, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Torsten Rohlfing | Jul 18, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Torsten Rohlfing | Jul 20, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Junqian Xu | Jul 22, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Torsten Rohlfing | Jul 22, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Junqian Xu | Jul 22, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Torsten Rohlfing | Jul 22, 2012 |
| RE: detect_adni_phantom missing in 2.2.2 | Torsten Rohlfing | Jul 24, 2012 |
