processing-scripts > About the scripts on Ubuntu 12.04
Aug 22, 2012 05:08 AM | About the scripts on Ubuntu 12.04 Hello community Regarding the scripts. I have the order/names of folders, as you recommend. subjs0001subjs0001/anat/anat.nii.gzsubjs0001/func1/rest_1.nii.gzsubjs0001/func2/rest_2.nii.gzI recently update the version of the Ubuntu to 12.04, I have to source all the programs again (AFNI, FSL, FREESURFER), because I lost all the configuration files (.bashrc - .cshrc), actually I have a problem with fslview, which I'm trying to solve with neurodebian team. I don't know if this is related to the scripts, because I can run the commands individually and open the GUI's (some in bash and others in tcsh).I set all the required lines in order to run batch_process.sh with option 1 (preprocessing). But when it runs, it shows several errors regarding it can't open several files (which I guess, the script itself must be create or call somewhere) and then in the segmentation step, Ubuntu shows an error regarding fsl/flirt stops. Before I had the version 10.10 and the scripts run perfect. Hope somebody can help me or give me an advice. Best regards, -- Carolina Valencia
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| Threaded View |
| Title | Author | Date |
| About the scripts on Ubuntu 12.04 | Carolina Valencia | Aug 22, 2012 |
| RE: About the scripts on Ubuntu 12.04 | Maarten Mennes | Aug 27, 2012 |
