[Camino-users] Connectivity Mapping with Camino

[Philip A Cook]

Hi guys,

Thanks for your help with this. I've noted this as a feature request - we should support non-sequential ROIs in track and conmap. 

I didn't get the patch, Ian, would you mind sending it to me?

Thanks,


Phil

On Oct 20, 2011, at 7:07 AM, Gavin Winston wrote:

> Ian Malone wrote:
>> Hi,
>> Two people asking about this on the same day? I came up with a patch for it recently, but haven't tested it thoroughly enough yet, principally in case it breaks anything else. The problem is that the ROI handling the connectivity mapping uses does not deal with non-sequential region numbering, I'm attaching my patch, but perhaps one of the Camino authors could look over it to see whether it's likely to break anything.
>> It also adds the following options:
>> -nopng : don't bother doing png output/displaying map
>> -outmat : out text matrix name
>> -outpng : out png name
> 
> Just to report back to the group the results of the above.
> 
> The patch kindly suggested by Ian works a treat for getting conmap to work.  However, it does also significantly break other parts of Camino.  For example, the track command which you need to have run prior to generating a connectivity map no longer processes the seed file correctly (it just crashes out with ROI errors).
> 
> Can anybody from the Camino team suggest a fix that makes the connectivity maps work but remains compatible with the rest of Camino?
> 
> Thanks
> 
> Gavin
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