[Camino-users] Re: Tracating fibers

[Birkan Tunc]

Ok I've found it :) -endpointfile does it



________________________________
 From: Birkan Tunc <ahmethungari at yahoo.com>
To: "camino-users at www.nitrc.org" <camino-users at www.nitrc.org> 
Sent: Wednesday, July 10, 2013 4:55 PM
Subject: Tracating fibers
 


Hi all,

Is there anyway to truncate fibers according to some ROIs? I want to keep the segments of fibers connecting two ROIs. 


When I seed tractography from ROI1 and keep fibers passing through ROI2 (by using procstreamlines -outputtracts -waypointfile), resulting fibers have parts which continue after passing ROI2. I wan to eliminate segments before ROI1 and after ROI2.

Thanks for help
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