[Camino-users] Error message

[Ferizi, Uran]

Hello Mareen,

Check that your data file (TM001.Bfloat) has data on it. When importing data, Camino does expect big-endianness.
See this for more: http://cmic.cs.ucl.ac.uk/camino/index.php?n=Documentation.DataImport

Uran


________________________________
From: camino-users-bounces at www.nitrc.org [camino-users-bounces at www.nitrc.org] on behalf of Mareen Weber [mareen.weber at gmail.com]
Sent: 13 March 2013 2:43 PM
To: camino-users at www.nitrc.org
Subject: [Camino-users] Error message

Hi all,
we are new to Camino and did all the tutorials without running into problems. However, when switching to our own data (multi-band DWI - qball), we ran into a couple of problems during model fit that we have not been able to resolve.

This is the command we ran:

modelfit -inputfile TM001.Bfloat -schemefile TM001_b3E9_vector.scheme -model ldt -bgmask TM001_qball_EC_BET_mask.nii.gz -outputfile TM001_dt.Bdouble

We got these error messages.
=====
Mar 13, 2013 10:38:12 AM misc.LoggedException logException
SEVERE: Exception in thread "main" class data.DataSourceException: End of file reached without completing voxel.
at data.VoxelOrderDataSource.readNextVoxel(VoxelOrderDataSource.java:279)
at data.VoxelOrderDataSource.nextVoxel(VoxelOrderDataSource.java:189)
at apps.ModelFit.execute(ModelFit.java:91)
at apps.EntryPoint.main(EntryPoint.java:284)

Mar 13, 2013 10:38:12 AM misc.LoggedException logException
SEVERE: Exception in thread "main" class misc.LoggedException: The data file does not contain a whole number of voxels. Check the scheme file. Got Exception data.DataSourceException: End of file reached without completing voxel.
at apps.ModelFit.execute(ModelFit.java:157)
at apps.EntryPoint.main(EntryPoint.java:284)

Exception in thread "main" misc.LoggedException: The data file does not contain a whole number of voxels. Check the scheme file. Got Exception data.DataSourceException: End of file reached without completing voxel.
at apps.ModelFit.execute(ModelFit.java:157)
at apps.EntryPoint.main(EntryPoint.java:284)
=====

I looked into the scheme file, and it looks ok (to me). Any ideas/tips?

Many thanks in advance!

-- Mareen
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