[Camino-users] [External] Connectivity Matrix Using FreeSurfer Parcellation

[maedeh khalilian]

Dear Philip,
Thank u very much.
Are there any toolboxes or software u would suggest?
I have SPM and MRIcro in my mind, but not sure if they work for DWI as well
as anatomical images.
Thanks in advance.
Cheers,
Maedeh.
On 5 Dec 2018 00:12, "Cook, Philip" <cookpa at pennmedicine.upenn.edu> wrote:

> They need to be in the same physical space, though not necessarily at the
> same resolution. I'm afraid Camino doesn't have any registration
> capabilities, you would need to align the labels to the DWI space yourself.
>
> On Dec 4, 2018, at 3:33 PM, maedeh khalilian <maedeh.kh73 at gmail.com>
> wrote:
>
> Dear Dr.Philip Cook
> Yeah, you are right. I could compute the eigen system after all. I'm
> rather new to Camino, so I'm not familiar with the commom errors or the
> information.
> Thank u very much.
> The next challenge I am faced with is calculating the connectivity matrix.
> Actually I have a parcellation which is the output of FreeSurfer, it is in
> my anatomical(T1 ) image's space, I mean both are (256*256*320).But the
> dimensions of my DWI is different.
> Do my DWI , my white matter (seed points) and my target file(
> parcellation) have to be in the same space???
> If yes, how should I do that?
> For example in DSI Studio the normalization gets done automatically.
> But now i dinno what to do.
> I would be grateful if you could help me.
> Thanks in advance.
> Best regards,
> Maedeh,
> _______________________________________________
> Camino-users mailing list
> Camino-users at www.nitrc.org
> https://www.nitrc.org/mailman/listinfo/camino-users
>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.nitrc.org/pipermail/camino-users/attachments/20181205/fc9ee24b/attachment.html>