<div dir="ltr"><div style="font-family:arial,sans-serif;font-size:13px">Hi Michael,</div><div style="font-family:arial,sans-serif;font-size:13px"><br></div><div style="font-family:arial,sans-serif;font-size:13px">The format of my FA map is nifti or analyze. I did this that you told me but I don't know how to open the image as slices.</div>
<div style="font-family:arial,sans-serif;font-size:13px"><br></div><div style="font-family:arial,sans-serif;font-size:13px">My objective is obtain images like the images that appears in camino tutorial.</div><div style="font-family:arial,sans-serif;font-size:13px">
<br></div><div style="font-family:arial,sans-serif;font-size:13px">Best regards,</div><div style="font-family:arial,sans-serif;font-size:13px"><br></div><div style="font-family:arial,sans-serif;font-size:13px">Manuel Blesa</div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">2014-04-24 18:27 GMT+02:00 Michael <span dir="ltr"><<a href="mailto:mdayan.research@gmail.com" target="_blank">mdayan.research@gmail.com</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Manuel,<div><br></div><div>What is the format of your FA map. Do you want a colour-coded map according to the main eigenvector direction? If so you can run the following command once you know the volume dimensions (dim1, dim2 and dim3) and pixel dimensions (pix1, pix2, pix3) of your FA volume:</div>
<div><br></div><div>dtfit dwi.Bfloat dmri_scheme | dteig | rgbscalarimg -datadims dim1 dim2 dim3 -voxeldims pix1 pix2 pix3 -outputfile FArgb.mha<br></div><div><br></div><div><br></div></div><div class="gmail_extra"><br><br>
<div class="gmail_quote"><div><div class="h5">On Thu, Apr 24, 2014 at 11:36 AM, Manuel Blesa Cábez <span dir="ltr"><<a href="mailto:mblesac@gmail.com" target="_blank">mblesac@gmail.com</a>></span> wrote:<br></div></div>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
<div dir="ltr">Dear all,<br><br>I'm new using Camino and paraview, I would like to open my picotracts file (.vtk) in paraview and overlap the FA map.<br><br>I
can open the tracts, but when I open the FA map doesn't appears
anything. I check it the file with MRIcron and the file is OK, the
problem is that I don't know how to open it in paraview and create some
slices with it.<br>
<br>Any help will be grateful.<br><br>Best regards,<br><br>Manuel Blesa</div>
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<br></blockquote></div><span class="HOEnZb"><font color="#888888"><br><br clear="all"><div><br></div>-- <br><div dir="ltr"><div>Michael Dayan, PhD</div><div>Postdoctoral Associate</div><div>Imaging, Data Evaluation and Analysis Laboratory (IDEAL)</div>
<div>Department of Radiology</div>
<div>Weill Cornell Medical College</div><div>515 East 71st St, S-125</div><div>New York, NY 10021</div><div>Tel: <a value="+19172396064" style="color:rgb(17,85,204)">917-239-6064</a></div><div>Fax: <a value="+12127464189" style="color:rgb(17,85,204)">212-746-4189</a></div>
<div>Email: <a href="mailto:michael.brainwiretech@gmail.com" style="color:rgb(17,85,204)" target="_blank">mdayan.research@gmail.com</a></div><div><a href="http://ideal-cornell.com/index.php/staff/staff/36-people/research-staff/214-michael-dayan" style="color:rgb(17,85,204)" target="_blank">http://ideal-cornell.com/index.php/staff/staff/36-people/research-staff/214-michael-dayan</a></div>
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