<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Bonjour,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Do you mean this lines?: <inside <i>public void update</i>></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small">"</span><font face="verdana, sans-serif"> // check if step will cross a barrier</font></div><div class="gmail_default"><font face="verdana, sans-serif"> try{</font></div><div class="gmail_default"><font face="verdana, sans-serif"> <span class="gmail-Apple-tab-span" style="white-space:pre"> </span>crosses=<b>crossesMembrane</b>(walker, newStep, step, normal, d, stepMade, origLength, in, <b>p</b>, report, cylWriter);</font></div><div class="gmail_default"><font face="verdana, sans-serif"> }</font></div><div class="gmail_default"><font face="verdana, sans-serif"> catch(StepRejectedException sre){</font></div><div class="gmail_default"><font face="verdana, sans-serif"> <span class="gmail-Apple-tab-span" style="white-space:pre"> </span>// reject if step is pathological</font></div><div class="gmail_default"><font face="verdana, sans-serif"> <span class="gmail-Apple-tab-span" style="white-space:pre"> </span>return false;</font></div><div class="gmail_default"><font face="verdana, sans-serif"> }</font></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small"><br></span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small">"</span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small"><br></span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small">You can find them on Substrate.java, probably near the 365 line (I have made so many changes that who knows). </span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small"><br></span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small">J.R.</span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small"><br></span></div><div class="gmail_default"><span style="font-family:verdana,sans-serif;font-size:small"><br></span></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><br></div>J.R.</div></div></div></div></div></div></div>
<br><div class="gmail_quote">2017-05-29 12:47 GMT+02:00 stefania oliviero <span dir="ltr"><<a href="mailto:stefania.oliviero@hotmail.it" target="_blank">stefania.oliviero@hotmail.it</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div id="m_-2477773830928675452divtagdefaultwrapper" style="font-size:12pt;color:#000000;font-family:Calibri,Arial,Helvetica,sans-serif" dir="ltr">
<p>Dear all,</p>
<p><span style="font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px">I'm implementing the Camino code</span> in order to insert
a new substrate type: SquashyInflammationSubstrate with myelinated cylinders. In my code each myelinated cylinder is represented by a pair of coaxial cylinders. Two different diffusion coeffiecients characterize intra-axonal space and myelin. This fact implies
that the permeability of the axonal membrane is directional and depends on the diffusion coefficient at the starting point of
<span style="font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px">
the passage through the membrane.</span></p>
<p>My problem is that I do not find the function that <span style="font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px">
determines whether a walker step actually crosses the membrane or not as the value of the permeability p changes ...</span></p>
<p><span style="font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px">I need to find that funcion to implement the new kind of
directional permeability (as a double[]).</span></p>
<p><span style="font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px"><br>
</span></p>
<p><span style="font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px">Thanks a lot ....</span></p><span class="HOEnZb"><font color="#888888">
<p><br>
</p>
<p>Stefania Oliviero</p>
</font></span></div>
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