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Hi,
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<div class="">I can't help much with Windows compilation.</div>
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<div class="">Regarding memory use, you can set the maximum allowed heap size for Java by doing</div>
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<div class=""> export CAMINO_HEAP_SIZE=10240</div>
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<div class="">where the number is in megabytes, so the above requests 10Gb of RAM. If your machine won't support this, it will return immediately with an error. Camino uses double-precision for most floating point operations, and this can be a problem for large
data sets. </div>
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<div class="">If the data is so large it cannot be held in memory, you would need to split it up. If you can split the 4D data into a bunch of 3D image files, you can use image2voxel to stream these into dtfit. This should require less memory.</div>
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<div class="">On Mar 5, 2018, at 5:33 PM, Soan Duong <<a href="mailto:stmd795@uowmail.edu.au" class="">stmd795@uowmail.edu.au</a>> wrote:</div>
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Dear Camino experts,<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
My name is Soan Duong, I am a PhD student at the University of Wollongong, Australia.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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I would like to fit the diffusion tensor for our data. Luckily, I found that Camino software allows me to do that. However, I am having trouble figuring out two issues.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -18pt;" class="">
<span class="">1.<span style="font-style: normal; font-variant-caps: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';" class=""> <span class="Apple-converted-space"> </span></span></span>I installed Camino
on Linux and ran<span class="Apple-converted-space"> </span><span style="font-family: 'Courier New';" class="">dtfit</span><span class="Apple-converted-space"> </span>successfully with the given example data. However, I could not run Camino<span class="Apple-converted-space"> </span><span style="font-family: 'Courier New';" class="">dtfit</span><span class="Apple-converted-space"> </span>on
my data because of out of memory (my data is about 5GB).<o:p class=""></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -18pt;" class="">
<span class="">2.<span style="font-style: normal; font-variant-caps: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';" class=""> <span class="Apple-converted-space"> </span></span></span>I tried to install
Camino on Window 10, and got stuck in compiling the toolkit step. Please note that I downloaded the source code as the given link in the<a href="https://sourceforge.net/projects/camino/files/latest/download" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">https://sourceforge.net/projects/camino/files/latest/download</a><span class="Apple-converted-space"> </span>for
Windows and I obtained the same zip file for Linux (<span style="font-family: 'Courier New';" class="">camino-code-9cf8bef17561e88d730df3bc6a8bc111ed1d93aa.zip</span>). I tried to compile the toolkit (unzip the source code folder, go to the source code folder
and run make command) but I failed.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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I was wondering if you have any ideas on what might going wrong and/or how to address those issues? Any help you have to offer would be greatly appreciated.<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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Best regards,<o:p class=""></o:p></div>
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Soan<o:p class=""></o:p></div>
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<span style="font-size: 10pt;" class="">Soan Duong<o:p class=""></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="font-size: 10pt;" class="">PhD Candidate</span><o:p class=""></o:p></div>
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<span style="font-size: 10pt;" class="">School of Electrical, Computer and Telecommunications Engineering</span><o:p class=""></o:p></div>
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<span style="font-size: 10pt;" class="">Faculty of Engineering and Information Sciences</span><o:p class=""></o:p></div>
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<span style="font-size: 10pt;" class="">University of Wollongong</span><o:p class=""></o:p></div>
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<span style="font-size: 10pt;" class="">Northfields Avenue, Wollongong, NSW 2522, Australia</span><o:p class=""></o:p></div>
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<span style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">_______________________________________________</span><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Camino-users
mailing list</span><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="mailto:Camino-users@www.nitrc.org" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">Camino-users@www.nitrc.org</a><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="https://www.nitrc.org/mailman/listinfo/camino-users" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">https://www.nitrc.org/mailman/listinfo/camino-users</a><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">_______________________________________________</span><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Camino-users
mailing list</span><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="mailto:Camino-users@www.nitrc.org" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">Camino-users@www.nitrc.org</a><br style="font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="https://www.nitrc.org/mailman/listinfo/camino-users" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">https://www.nitrc.org/mailman/listinfo/camino-users</a></div>
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