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<p style="margin-top:0;margin-bottom:0">Hi again Matt,s</p>
<p style="margin-top:0;margin-bottom:0">Unfortunately, my problem in unsolved.</p>
<p style="margin-top:0;margin-bottom:0">I obtained my file .bfloat from Monte-Carlo diffusion simulation, so it has no header file, required from command voxel2image.</p>
<p style="margin-top:0;margin-bottom:0">I try to create an header file by using the follow command</p>
<p style="margin-top:0;margin-bottom:0"><span style="color: rgb(0, 111, 201);">analyzeheader -datadims 10 1 1 -voxeldims 1.7 1.7 1.7 -datatype double > ND_p00_g70.hdr</span><br>
</p>
<p style="margin-top:0;margin-bottom:0"><span>and the output <span style="font-family: Calibri, Helvetica, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;">ND_p00_g70.hdr
is done, but he doesn't contain the information of the signal ...</span></span></p>
<p style="margin-top:0;margin-bottom:0"><span><span style="font-family: Calibri, Helvetica, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;">When i run the command </span></span></p>
<p style="margin-top:0;margin-bottom:0"><span><span style="color: rgb(0, 111, 201);">voxel2image -inputfile ND_p00_g70_NOISE.Bfloat -outputroot nifti_ -header </span><span style="font-family: Calibri, Helvetica, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px; color: rgb(0, 111, 201);"> ND_p00_g70.hdr</span></span><br>
</p>
<p style="margin-top:0;margin-bottom:0"><span><span style="font-family: Calibri, Helvetica, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;">this message appears</span></span></p>
<p style="margin-top:0;margin-bottom:0"><span><span style="font-family: Calibri, Helvetica, sans-serif, EmojiFont, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;"><span>Exception in
thread "main" class misc.LoggedException: Can't find image for input file name ND_p00_g70.hdr</span><br>
</span></span></p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>Da:</b> Hall, Matt <matt.hall@ucl.ac.uk><br>
<b>Inviato:</b> giovedì 13 settembre 2018 10:42:33<br>
<b>A:</b> stefania oliviero; camino-users@www.nitrc.org<br>
<b>Oggetto:</b> RE: how to read a camino .Bfloat file in NODDI toolbox</font>
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<p class="x_MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D">Hi Stephania,</span></p>
<p class="x_MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D"> </span></p>
<p class="x_MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D">Camino provides tools to convert its internal bfloat (etc) formats to and from Nifti. Have a look at the DTI tutorial on the camino website, and also at the
man page for the camino command voxel2image.</span></p>
<p class="x_MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D"> </span></p>
<p class="x_MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D">Hope this helps,</span></p>
<p class="x_MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D">Matt.</span></p>
<p class="x_MsoNormal"><a name="x__MailEndCompose"><span style="font-size:11.0pt; font-family:"Calibri",sans-serif; color:#1F497D"> </span></a></p>
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<p class="x_MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt; font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt; font-family:"Calibri",sans-serif"> camino-users-bounces@www.nitrc.org [mailto:camino-users-bounces@www.nitrc.org]
<b>On Behalf Of </b>stefania oliviero<br>
<b>Sent:</b> 13 September 2018 08:37<br>
<b>To:</b> camino-users@www.nitrc.org<br>
<b>Subject:</b> [Camino-users] how to read a camino .Bfloat file in NODDI toolbox</span></p>
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<p><span style="font-family:"Calibri",sans-serif; color:black">Hi all,</span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black">i generated the signal coming from one substrate obtaining a substrate.bfloat file.</span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black">I would like to read this signal in FSL and then, analyse it in NODDI toolbox, but I don't understand how to do this. </span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black">Which tranformation have I to do and which commands have I to do use ? </span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black">Thanks everybody in advance</span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black"> </span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black">Cheers </span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black">Stefania Oliviero</span></p>
<p><span style="font-family:"Calibri",sans-serif; color:black"> </span></p>
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