brains:Configure
From NITRC Wiki
BRAINS will consult two files upon start up to configure the program. The first file consulted is the file brains3rc that is in the same directory as the brains3 binary. The following steps are performed in this initialization
- Specify the location for the external binaries
- Specify the location for shared libraries
- Specify the location of the TCL scripts
- Initialize the BrainsConfig array to contain the location of files needed for Autoworkup
- AutoWorkupVersion - Autoworkup version
- T1ACPCModelFile - Constellation detector T1 model
- T2ACPCModelFile - Constellation detector T2 model
- TalairachDir - Talirach box files
- BRAINSABCAtlasDir - Atlas directory for segmentation
- EmsAtlasDir - Atlas directory for EM segmentation
- BRAINSANNDir - Atlas directory for ANN segmentation
- EarlierAtlasDir - Deprecated variable
- IplFlag - FLag if being used at Iowa
- GlobalDataDir - Global data directory for results
- GtractVersion - Version of GTRACT used
- Source TCL scripts
The second file is the file .brains3rc in the users HOME directory. This file is in general not needed, but can be used to customize BRAINS. This file is simply a TCL script that will be sourced upon start up.
