brainsroiauto:BRAINSROIAuto Implementation

From NITRC Wiki

  ./BRAINSROIAuto  [--processinformationaddress <std::string>] [--xml]
                   [--echo] [--outputVolumePixelType <float|short|ushort
                   |int|uint|uchar>] [--closingSize <int>]
                   [--thresholdCorrectionFactor <double>]
                   [--otsuPercentileThreshold <double>]
                   [--outputClippedVolumeROI <std::string>]
                   [--outputROIMaskVolume <std::string>] [--inputVolume
                   <std::string>] [--] [--version] [-h]

  --processinformationaddress <std::string>
    Address of a structure to store process information (progress, abort,
    etc.). (default: 0)

  --xml
    Produce xml description of command line arguments (default: 0)

  --echo
    Echo the command line arguments (default: 0)

  --outputVolumePixelType <float|short|ushort|int|uint|uchar>
    The output image Pixel Type is the scalar datatype for representation
    of the Output Volume. (default: short)

  --closingSize <int>
    The Closing Size for largest connected filled mask. (default: 7)

  --thresholdCorrectionFactor <double>
    A factor to scale the Otsu algorithm's result threshold, in case
    clipping mangles the image. (default: 1)

  --otsuPercentileThreshold <double>
    Parameter to the Otsu threshold algorithm. (default: 0.01)

  --outputClippedVolumeROI <std::string>
    The inputVolume clipped to the region of the brain mask.

  --outputROIMaskVolume <std::string>
    The ROI automatically found in the input image.

  --inputVolume <std::string>
    The input image for finding the largest region filled mask.

  --,  --ignore_rest
    Ignores the rest of the labeled arguments following this flag.

  --version
    Displays version information and exits.

  -h,  --help
    Displays usage information and exits.