dtiprocess:Maxcurvature

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maxcurvature

General Information

Module Type & Category

Type: CLI

Category: DTI.DTIProcess

Authors, Collaborators & Contact

Author: Casey Goodlet

Contributors: Hans Johnson, Sylvain Gouttard

Contact: Sylvain Gouttard, gouttard@sci.utah.edu

Module Description

Program title	maxcurvature
Program description	This program computes the Hessian of the FA image (--image). We use this scalar image as a registration input when doing DTI atlas building. For most adult FA we use a sigma of 2 whereas for neonate or primate images and sigma of 1 or 1.5 is more appropriate. For really noisy images, 2.5 - 4 can be considered. The final image (--output) shows the main feature of the input image.
Program version	1.1.0
Program documentation-url	http://www.google.com/

Usage

Use Cases, Examples

This module is especially appropriate for these use cases:

Use Case 1:
Use Case 2:

Examples of the module in use:

Example 1:
Example 2:

Tutorials

Tutorial 1
- Data Set 1

Quick Tour of Features and Use

A list panels in the interface, their features, what they mean, and how to use them.

Output file
- Output file [----output] [-o]: Output File
- FA image file [----image] [-i]: FA Image
- Verbose [----verbose] [-v]: produce verbose output Default value: 0
- Scale of Gradients [----sigma] [-s]: Scale of Gradients Default value: 2

Image:ScreenshotBlankNotOptional.png

User Interface

Development

Notes from the Developer(s)

Algorithms used, library classes depended upon, use cases, etc.

Dependencies

Other modules or packages that are required for this module's use.

Tests

On the Dashboard, these tests verify that the module is working on various platforms:

MyModuleTest1 MyModuleTest1.cxx
MyModuleTest2 MyModuleTest2.cxx

Known bugs

Links to known bugs in the Slicer3 bug tracker

Bug 000: description

Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Links to the module's source code:

Source code:

Doxygen documentation:

class1

More Information

Acknowledgment

Hans Johnson(1,3,4); Kent Williams(1); (1=University of Iowa Department of Psychiatry, 3=University of Iowa Department of Biomedical Engineering, 4=University of Iowa Department of Electrical and Computer Engineering) provided conversions to make DTIProcess compatible with Slicer execution, and simplified the stand-alone build requirements by removing the dependancies on boost and a fortran compiler.