nitrc:Funded Projects
From NITRC Wiki
This page lists awards made through NITRC funding announcements, all funded by the NIH Blueprint for Neuroscience. Please see the Funding Opportunities for these and other announcements.
Click hyper-linked grant numbers to access NIH's RePORTER database, which will provide brief descriptions of the grants. If no hyperlink is provided, please visit http://projectreporter.nih.gov/reporter.cfm, enter the grant number (no dashes, % before and after) under "Project Number", enter the funding year under "Fiscal Year", and click "Submit Query" to search for the description of the grant.
Click hyper-linked project titles or grantee names to access the associated NITRC projects or people profiles.
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PAR-07-417: Neuroimaging Informatics Software Enhancement for Improved Interoperability and Dissemination
Awarded in FY 2007
(These FY 2007 awards were funded under an earlier version of this notice, RFA-EB-07-002.)
- NITRC grant: R03-EB008201 Enhancement and Dissemination of ART: An Automatic Registration Toolbox
- NITRC grant: R03-EB008203 Integration of Metabolomics in Neuroimaging: Software for Brain NMR Spectroscopy
- NITRC grant: R03-EB008136 Free Tools for High Resolution Voxel-wise Morphometric Analysis
- NITRC grant: R03-EB008249 Enhancing Interoperability & Usability of !BrainImageJava for Morphometric Imaging
- NITRC grant: R03-EB008200 Accessibility Enhancements for ITK-SNAP 3D Medical Image Segmentation Software
Awarded in FY 2008
Ghosh, Satrajit S and Whitfield-Gabrielli Susan
- NITRC grant: R03-EB008673 Dissemination of Cross-Platform Software for Artifact Detection and Region of Interest Analysis of fMRI Data
- NITRC grant: R03-EB008670 WFU Pickatlas Interoperability
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- NITRC grant: R03-EB008134 Automated Alignment of MRI Rodent Brain to Sterotaxic Atlases
- NITRC grant: R03-EB008674 SPHARM Shape Modeling and Analysis Toolkit for Brain Imaging
- NITRC grant: R03-EB008235 An Integrated Package for the Processing and Analysis of Diffusion Tensor Imaging
Awarded in FY 2009
- NITRC grant: R03-EB009310 An open-source software for Bayesian neuroimaging data analysis
- NITRC grant: R03-EB009321 Interoperability and Usability Enhancement to DTI ToolKit
- NITRC grant: R03-EB008675 Extending and Enhancing an fMRI Power Analysis Tool
- NITRC grant: R03-EB008084 Integrated Automated Software Tools for Fast Analysis of Magnetic Resonance Spect
Awarded in FY 2010
Hale, John C
- NITRC grant: R03-EB011961 Comprehensive Redaction for Neurological Imaging
- NITRC grant: R03-EB012461 Resource Development for the Java Image Science Toolkit
- NITRC grant:R03-EB012464 Enhancing 3dsvm to improve its interoperability and dissemination
Awarded in FY 2011
NOT-EB-08-002: Administrative Supplements for Neuroimaging Informatics Software Enhancement for Improved Interoperability and Dissemination
Awarded in FY 2007
- Parent grant: R01-EB006841 Multivariate methods for identifying multi-task/multimodal brain imaging biomarkers
- Supplement goals: Document and distribute a research database system optimized for multi-task/multimodal brain imaging studies.
- Parent grant: R01-AG014971 Computational Neuroanatomy of aging using shape analysis
- Supplement goals: Enhance and distribute software for measuring longitudinal brain change via a 4D segmentation algorithm. Enhancement of CLASSIC and SGTA.
- Parent grant: P30-MH062512 HIV Neurobehavioral Research Center
- Supplement goals: Register and make available characterized data sets from different neuroimaging modalities.
- Parent grant: R01-MH079752 Role of evolving white matter damage in neurocognitive effects of HIV and HCV
- Supplement goals: Document and package tools developed over 20 years for MR morphometric analyses of multi-spectral images sequences. Work focuses on neurodegenerative processes associated with HIV, but can also be applied to AD, HD, FAS, PTSD and Aging. One module is focused on image registration and one on image segmentation.
- Parent grant: P41-RR012553 Center for Integrative Biomedical Computing
- Supplement goals: Create two new versions of !BioTensor (Software for Diffusion Tensor Visualization and Analysis), one in the form of a set of modules within the SCIRun problem solving environment (the “!BioTensor network”) and the other as an independent binary executable (the “!BioTensor application”).
- Parent grant: U54-EB005149 National Alliance for Medical Image Computing
- Supplement goals: Disseminate user-developed NA-MIC tools.
- Parent grant: R01-EB003832 Manipulating Neural Tissue with Ultrashort Laser Pulses
- Supplement goals: Improve the MPScope software package (a comprehensive suite of programs for two-photon laser scanning fluorescence microscopy) in terms of modularity, interoperability and data dissemination using Web Services. MPScope space in NITRC
- Parent grant: R01-NS050568 BRAINS Morphology and Image Analysis
- Supplement goals: This proposal supports modifications and enhancement of the GTRACT diffusion tensor suite. The GTRACT software suite will be integrated with Slicer3 and a Slicer3-compatible graphical user interface created. A users guide and code will be provided.
Mintun, Mark
- Parent grant: P30-NS048056 NINDS Center Core for Brain Imaging
- Supplement goals: Build an automated and configurable processing and analysis pipeline for functional connectivity analysis. Prepare and distribute documentation describing the rationale and usage of the implemented pipeline. Prepare and distribute the source code and an installation package for using and extending the pipeline in a local environment.
- Parent grant: R01-EB006494 Bioimage Suite: A structural, functional and metabolic image analysis platform
- Supplement<span id="fck_dom_range_temp_1303085334791_640" /> goals: Enhance existing database configuration and interface for the integrated analysis of images so as to make it available to NITRC. The existing database is designed for processing of large datasets and is directly integrated with image acquisition.
- Parent grant: R01-MH068318 Neuralanatomical MRI Studies of Childhood Diseases
- Supplement goals: Enhance statistical tool for detecting significant associations between brain measures and clinical/genetic measures across brain surface. Detailed volumetric and morphological measures of cortical/subcortical regions.
- Parent grant: U24-RR021992 Function BIRN
- Supplement goals: Fully document the data calibration and collection tools developed through the Function BIRN and develop a series of tutorials for both users and developers, to increase their usability by the neuroscience and broader research community.
- Parent grant: P01-NS041328 Human Functional Brain Anatomy
- Supplement goals: Make CIGAL (Compilable Imaging, Graphics, and Analysis Language) available to the neuroscience community and develop community standards of interoperability between fMRI behavioral software and image analysis software. CIGAL is software that provides real-time video and audio stimulus presentation, behavioral response monitoring, integration of physiological response recordings, and accurate synchronization with the MR imager.
Awarded in FY 2008
- Parent grant: P30-AG010129 U.C. Davis Alzheimer’s Disease Core Center
- Supplement goals: enhance the Center’s image management software to allow non-technical end-users to tailor data organization and data retrieval to their own scientific needs and will make the software more interoperable by handling more image formats and running on more operating systems.
- Parent grant: R01-EB006266 Shape Optimizing Diffeomorphisms for Computational Biology
- Supplement goals: Open-source tools for large deformation normalization and template construction.
- Parent grant: R01-MH073529 Database system for patient-based neuroscience research
- Supplement goals: Make existing lesion-analysis tools more accessible through improved documentation, interoperability, portability, and usability.
- Parent grant: R01-NS056307 Automatic Cerebellar MRI Labeling in Health and Disease
- Supplement goals: Provide a web-based, remote, and user-friendly interface for manual delineation and segmentation of the cerebellum.
Reese, Benjamin
- Parent grant: R01-EY011087 Dispersion Patterns for Retinal Neuroblasts
- Supplement goals: Further develop Matlab-based tools which would provide a quantitative assessment of the dynamics of neuronal cytoarchitecture, SpatialAnalysis3D and SpatialAnalysis2D.
- Parent grant: R01-NS054266 Dissociating Components of the Attentional Network in Neglect
- Supplement goals: Enhance the MRIcro series of software with new documentation, tutorials, a simpler, interactive interface and flash-based videos for the naïve user. MRIcro provides intuitive tools for mapping regions of interest, flexible image format conversion, calculation of lesion-symptom statistics, and visualization. It was created as part of the parent project.
- Parent grant: R01 EB008015 Assessment of lmproved Navigation for Pediatric Brain Tumor Surgery
- Supplement goal: Enhancement, GUI, and tutorial for STAPLE (Simultaneous Truth and Performance Level Estimation) along with test data.
Awarded in FY 2009
- Parent grant: R01 DC004855 Cortical Spatiotemporal Plasticity in Humans
- Supplement goal: to make software enhancements to NUTMEG and release v3.0; to add content to the NUTMEG website and Wiki pages in order to make it more accessible to users and to developers who may want to enhance the software. NUTMEG (Neurodynamic Utility Toolbox for MEG) is a MEG/EEG analysis toolbox for reconstructing the spatiotemporal dynamics of neural activation and overlay them onto structural MR images.
- Parent grant: R01 MH064498 Investigating Cognitive and Neural Bases of Working Memory
- Supplement goal: provide the software for carrying out constrained : Principal Component Analysis (cPCA) for analysis of fMRI data in order to analyze anatomically distributed but highly interactive circuits or pathways during the performance of behavioral and cognitive tasks. The software package will include a GUI that runs on Matlab, a manual, and example data that can be used in a software demo.
Awarded in FY 2010
- Parent grant: P30-AG010129 U.C. Davis Alzheimer’s Disease Core Center
- Supplement goals: enhance the Center’s image management software
- Parent grant: P30-AG010129 U.C. Davis Alzheimer’s Disease Core Center
- Supplement goals: to provide a turn-key solution for analyzing longitudinal neuroimaging data
