CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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CONN error posted by Maayan Merhav 1 hour ago

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RE: Batch -- Preprocessing Error posted by Jeremy Guillon on Mar 26

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No suprathreshold voxels in ROI file posted by Maayan Merhav on Mar 25

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RE: Import Values with Covariate posted by Drew Sevel on Mar 25

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RE: New subjects create NaN 2nd level covariates posted by Alfonso Nieto-Castanon on Mar 23

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New subjects create NaN 2nd level covariates posted by Matt Vandermeer on Mar 23

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RE: Error at step 5/7: Importing ROI data posted by Alfonso Nieto-Castanon on Mar 23

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RE: view option errors (3D image on graph thoery) posted by Alfonso Nieto-Castanon on Mar 23

File Activity

conn: conn v.17.c release

conn17c.zip posted by Alfonso Nieto-Castanon on Mar 23

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RE: Extracting Betas from Masked /SVC Regression posted by Humza Ahmed on Mar 23