Other/Proprietary License
Yes
NITRC
Free-D
Free-D allows the reconstruction of 3D models from image stacks (segmentation, registration, surface reconstruction, 3D rendering).
It is designed in the goal of non-linear spatial normalization and averaging of collections of individual 3D models (this module is currently in alpha version only and not included in the distributed version).
Free-D
Other/Proprietary License, Beta
http://www.nitrc.org/projects/incf_free-d/, http://amib.jouy.inra.fr/html/software_en.html