MGH CSRL License Yes NITRC JIP fMRI Analysis Toolkit MacOS, Linux Yes C Download jip-overview.pdf to see if these tools interest you. The JIP Toolkit was developed primarily for analysis of rodent and non-human primate fMRI data. The toolkit consists of binary executables, highly portable open-source c code, and image resources that enable 1) Automated registration based upon mutual information (affine, non-linear warps), with flexible control and visualization of each step; 2) visualization of 4-dimensional data using either mosaic or tri-planar display of the z/slice dimension, and integration of a general linear model for graphical display of time series analysis; 3) A simple and flexible 1st-order GLM for time series analysis, plus a 2nd-order GLM analysis following the Worsley 2002 scheme, and 4) MRI templates to place your rodent and non-human primate data into standardized spaces. 2011-1-16 Beta v2.1 2011-1-16 Beta v2.1 2011-1-16 Beta v2.1 2011-1-05 Beta v2.0 2011-1-05 Beta v2.0 2011-1-05 Beta v2.0 2011-1-05 Beta v2.0 2011-1-05 Beta v2.0 JIP fMRI Analysis Toolkit Console (Text Based), X11 Applications, MGH CSRL License, English, Beta, Atlas Data, Developers, End Users, Image-to-Image, MacOS, Linux, C, Atlas Application, Resampling, Affine Warp, Nonlinear Warp, Time Domain Analysis, Other Format, NIfTI-1, Image Display http://www.nitrc.org/projects/jip/, http://www.nitrc.org/projects/jip/