Pipeline system for Octave and Matlab

The pipeline system for Octave and Matlab (PSOM) is a lightweight library to manage complex multi-stage data processing. A pipeline is a collection of jobs, i.e. Matlab or Octave codes with a well identified set of options that are using files for inputs and outputs. To use PSOM, the only requirement is to generate a description of a pipeline in the form of a simple Matlab/Octave structure. PSOM then automatically offers the following services:

* Run jobs in parallel using multiple CPUs or within a distributed computing environment.
* Generate log files and keep track of the pipeline execution. These logs are detailed enough to fully reproduce the analysis.
* Handle job failures : successful completion of jobs is checked and failed jobs can be restarted.
* Handle updates of the pipeline : change options or add jobs and let PSOM figure out what to reprocess !
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Specifications

Category:Algorithm or Reusable Library, Workflow
License:MIT/X Consortium License
Development Status:5 - Production/Stable
Domain:Domain Independent
Intended Audience:Developers
Natural Language:English
Operating System:MacOS, Windows, Linux
Programming Language:MATLAB, Other Programming Language

Associations

is part of:NeuroImaging Analysis Kit (NIAK)
is required to run:PANDA: a pipeline tool for diffusion MRI

Recent Activity

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News Activity

Tool & Resource news

PSOM presentation at HBM 2013 posted by Pierre Bellec on Jun 15

File Activity

psom: PSOM release 1.0  release

PSOM HBM 2013 presentation posted by Pierre Bellec on Jun 15

Forum Activity

open-discussion forum

RE: Some mistakes when using PSOM posted by Zaixu Cui on Apr 25

Forum Activity

open-discussion forum

RE: Some mistakes when using PSOM posted by Zaixu Cui on Apr 17

Forum Activity

open-discussion forum

RE: Some mistakes when using PSOM posted by Pierre Bellec on Apr 16

Forum Activity

open-discussion forum

Some mistakes when using PSOM posted by Zaixu Cui on Apr 16

News Activity

Tool & Resource news

PSOM 1.0 released posted by Pierre Bellec on Dec 13, 2012

File Activity

psom: PSOM release 1.0  release

PSOM archive (.tar.gz for Linux) posted by Pierre Bellec on Dec 12, 2012

File Activity

psom: PSOM release 1.0  release

PSOM archive (.zip for Windows and MAC OSX) posted by Pierre Bellec on Dec 12, 2012

File Activity

psom: PSOM release 1.0  release

psom-1.0.zip-deleted-1355372841 posted by Pierre Bellec on Dec 12, 2012