Pipeline system for Octave and Matlab

The pipeline system for Octave and Matlab (PSOM) is a lightweight library to manage complex multi-stage data processing. A pipeline is a collection of jobs, i.e. Matlab or Octave codes that are using files for inputs and outputs, described in the form of a simple Matlab/Octave structure. PSOM automatically offers the following services:

* Run jobs in parallel using multiple CPUs or within a distributed computing environment.
* Generate log files and keep track of the pipeline execution. These logs are detailed enough to fully reproduce the analysis.
* Handle job failures : successful completion of jobs is checked and failed jobs can be restarted.
* Handle updates of the pipeline : change options or add jobs and let PSOM figure out what to reprocess !
Currently, PSOM can execute jobs locally (in a given session or in the background), or on a distributed cluster using the 'qsub' system (either torque, SGE or PBS) or the 'msub' system (MOAB).
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Specifications

Category:Algorithm or Reusable Library, Workflow
License:MIT/X Consortium License
Development Status:5 - Production/Stable
Domain:Domain Independent
Intended Audience:Developers
Natural Language:English
Operating System:MacOS, Windows, Linux
Programming Language:MATLAB, Other Programming Language

Associations

is part of:NeuroImaging Analysis Kit (NIAK)
is required to run:PANDA: a pipeline tool for diffusion MRI

Recent Activity

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News Activity

Tool & Resource news

PSOM now on github posted by Pierre Bellec on Jul 16

News Activity

Tool & Resource news

PSOM release 1.0.2 posted by Pierre Bellec on Aug 27, 2013

News Activity

Tool & Resource news

PSOM release 1.0.1 posted by Pierre Bellec on Aug 27, 2013

File Activity

psom: PSOM release 1.0.2 release

PSOM release 1.0.2 posted by Pierre Bellec on Aug 21, 2013

File Activity

psom: PSOM release 1.0.1 release

PSOM release 1.0.1 posted by Pierre Bellec on Aug 20, 2013

News Activity

Tool & Resource news

PSOM presentation at HBM 2013 posted by Pierre Bellec on Jun 15, 2013

File Activity

psom: PSOM release 1.0  release

PSOM HBM 2013 presentation posted by Pierre Bellec on Jun 15, 2013

Forum Activity

open-discussion forum

RE: Some mistakes when using PSOM posted by Zaixu Cui on Apr 25, 2013

Forum Activity

open-discussion forum

RE: Some mistakes when using PSOM posted by Zaixu Cui on Apr 17, 2013

Forum Activity

open-discussion forum

RE: Some mistakes when using PSOM posted by Pierre Bellec on Apr 16, 2013