
  Section of Biomedical Image Analysis
  Department of Radiology
  University of Pennsylvania
  3600 Market Street, Suite 380
  Philadelphia, PA 19104

  Web:   http://www.cbica.upenn.edu/sbia/
  Email: sbia-software at uphs.upenn.edu

  Copyright (c) 2014 University of Pennsylvania. All rights reserved.
  See http://www.cbica.upenn.edu/sbia/software/license.html or COPYING file.



INTRODUCTION
============

  See http://www.cbica.upenn.edu/sbia/software/tumorsimulator/installation.html or
  the installation section of the software manual.



Quick Summary of Installation
=============================


Build PETSc
-----------

  * Step 1. Download and extract source files:

    wget http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.5.2.tar.gz
    tar xvf petsc-3.5.2.tar.gz
    cd petsc-3.5.2

  * Step 2. Configure:

    ./configure --with-mpi=0 --with-shared-libraries=0 --with-debugging=0

  * Step 3. Build:

    export PETSC_DIR=$PWD
    export PETSC_ARCH=arch-linux2-c-opt
    make


Build BTMCS
-----------

  * Step 1. Extract source files and create the build directory:

    tar xvf braintumormodeling_coupledsolver-${version}-source.tar.gz
    mkdir braintumormodeling_coupledsolver-${version}-build
    cd braintumormodeling_coupledsolver-${version}-build

  * Step 2. Run CMake to configure the build tree:

    ccmake ../braintumormodeling_coupledsolver-${version}-source

  * Step 3. Build:

    make

  * Step 4. Test (optional):

    make test

  * Step 5. Install:

    make install
