#!/usr/bin/ksh
#
# usage:
#	wfu_AUTOSPM5 study_directory
#
# run wfu_autoSPM5.m on study_directory
#

. $WFU_PATH/global.site.ksh

if (test $# -lt 1) then
	echo usage:
	echo wfu_AUTOSPM5 study_directory
	exit
fi

curDir=`pwd`
studyDir=$1

if [[ ! -d $studyDir ]]; then
	echo "no such directory: $studyDir"
	exit
fi

echo "running autoSPM5 processing: $studyDir"
cd $studyDir
cmd="wfu_startup([],5);wfu_autoSPM5(pwd);exit;"
echo $cmd
${batch_matlab} -r "$cmd"

cd $curDir


