./edu/jhu/bme/smile/demo/.#ImageArithmetic.java.1.5
./edu/jhu/bme/smile/demo/AddingNoise.java
./edu/jhu/bme/smile/demo/ChebyShevFitting.java
./edu/jhu/bme/smile/demo/FirstPluginTest.java
./edu/jhu/bme/smile/demo/ImageAlgebra.java
./edu/jhu/bme/smile/demo/ImageArithmetic.java
./edu/jhu/bme/smile/demo/ImageCollectionAlgebra.java
./edu/jhu/bme/smile/demo/MemoryDemo.java
./edu/jhu/bme/smile/demo/RandomVol.java
./edu/jhu/bme/smile/demo/ScaleImageDemo.java
./edu/jhu/bme/smile/demo/SmileAlgorithmDemo.java
./edu/jhu/bme/smile/plugins/nia/NIA4Dto3dFileCollection.java
./edu/jhu/ece/iacl/pami/CreateCrossingFiber.java
./edu/jhu/ece/iacl/pami/CreateMask.java
./edu/jhu/ece/iacl/pami/CreateTesselatedSurface.java
./edu/jhu/ece/iacl/pami/CropVolume.java
./edu/jhu/ece/iacl/pami/DivideReference.java
./edu/jhu/ece/iacl/pami/GenerateTensors.java
./edu/jhu/ece/iacl/pami/NameTest.java
./edu/jhu/ece/iacl/pami/SimFramework.java
./edu/jhu/ece/iacl/plugins/dti/.#ComputeMeanB0.java.1.3
./edu/jhu/ece/iacl/plugins/dti/.#ComputeMeanB0.java.1.8
./edu/jhu/ece/iacl/plugins/dti/AlgorithmGradientTableCorrection.java
./edu/jhu/ece/iacl/plugins/dti/ComputeMeanB0.java
./edu/jhu/ece/iacl/plugins/dti/ComputeMeanDW.java
./edu/jhu/ece/iacl/plugins/dti/DWIBallStickEstCamino.java
./edu/jhu/ece/iacl/plugins/dti/DWIBallStickEstCaminoFileCollection.java
./edu/jhu/ece/iacl/plugins/dti/DWICombineBvalTables.java
./edu/jhu/ece/iacl/plugins/dti/DWICombineGradTables.java
./edu/jhu/ece/iacl/plugins/dti/DWIDefineCaminoScheme.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorColorEncodedMap.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorContrasts.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorEstCamino.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorEstCaminoFileCollection.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorEstCaminoRESTOREVariableNoiseField.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorEstLikelihood.java
./edu/jhu/ece/iacl/plugins/dti/DWITensorEstLLMSE.java
./edu/jhu/ece/iacl/plugins/dti/DWIThreeTensorEstCamino.java
./edu/jhu/ece/iacl/plugins/dti/DWIThreeTensorEstCaminoFileCollection.java
./edu/jhu/ece/iacl/plugins/dti/DWITwoTensorEstCamino.java
./edu/jhu/ece/iacl/plugins/dti/DWITwoTensorEstCaminoFileCollection.java
./edu/jhu/ece/iacl/plugins/dti/LocalNoiseEstimate.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmAppendBvals.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmAppendGradientTable.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmExtractB0.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmFlipVectorTable.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmFlipVectorVolume.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmFormatVectorImage.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmMultiGradientTableCreator.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmMultiParV3Info.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmMultiParV4Info.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmSubsampleFibers.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmTableFormat.java
./edu/jhu/ece/iacl/plugins/dti/MedicAlgorithmTensorFormatConvert.java
./edu/jhu/ece/iacl/plugins/dti/RegularizeNoiseField.java
./edu/jhu/ece/iacl/plugins/dti/tractography/AlgorithmComputeConnectivityMatrix.java
./edu/jhu/ece/iacl/plugins/dti/tractography/Fiber2Volume.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmApplyFiberROI.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmDeformFibers.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmFiberComparison.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmFibersFromSurfaceROI.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmFiberTracker.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmFiberVolumeStatistics.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmTransformFibers.java
./edu/jhu/ece/iacl/plugins/dti/tractography/MedicAlgorithmWildBootTrac.java
./edu/jhu/ece/iacl/plugins/dti/tractography/SImageTractAnalysis.java
./edu/jhu/ece/iacl/plugins/hardi/CFARIEstimation.java
./edu/jhu/ece/iacl/plugins/hardi/CFARIEstimation2.java
./edu/jhu/ece/iacl/plugins/hardi/CreatePlatonicSolidSurface.java
./edu/jhu/ece/iacl/plugins/hardi/DefineCFARIScheme.java
./edu/jhu/ece/iacl/plugins/hardi/ExtractBvalGradFromPAR.java
./edu/jhu/ece/iacl/plugins/hardi/FunkRadonTransform.java
./edu/jhu/ece/iacl/plugins/hardi/GradToSurf.java
./edu/jhu/ece/iacl/plugins/hardi/NormalizeToUnitMagnitude.java
./edu/jhu/ece/iacl/plugins/hardi/Process3DMRIImages.java
./edu/jhu/ece/iacl/plugins/hardi/QBallEstimation.java
./edu/jhu/ece/iacl/plugins/hardi/QBallModifiedRealProjection.java
./edu/jhu/ece/iacl/plugins/hardi/QBallProjection.java
./edu/jhu/ece/iacl/plugins/hardi/SelectUniqueDiffusionDirections.java
./edu/jhu/ece/iacl/plugins/hardi/SurfToGrad.java
./edu/jhu/ece/iacl/plugins/hardi/TesselateSurface.java
./edu/jhu/ece/iacl/plugins/labeling/atlasing/AlgorithmLogOdds.java
./edu/jhu/ece/iacl/plugins/labeling/MedicAlgorithmCleanSurfLabels.java
./edu/jhu/ece/iacl/plugins/labeling/MedicAlgorithmFMLabelExtension.java
./edu/jhu/ece/iacl/plugins/labeling/MedicAlgorithmMultiAtlasSurfaceLabeling.java
./edu/jhu/ece/iacl/plugins/labeling/MedicAlgorithmVolumeToSurfaceLabeling.java
./edu/jhu/ece/iacl/plugins/labeling/simulation/AlgorithmSimulateSurfaceRater.java
./edu/jhu/ece/iacl/plugins/labeling/simulation/AlgorithmSimulateVolumeRater.java
./edu/jhu/ece/iacl/plugins/labeling/staple/MedicAlgorithmSTAPLE.java
./edu/jhu/ece/iacl/plugins/labeling/staple/MedicAlgorithmSTAPLEgeneral.java
./edu/jhu/ece/iacl/plugins/labeling/staple/MedicAlgorithmSTAPLEsurface.java
./edu/jhu/ece/iacl/plugins/quantitative/EstimateMTR.java
./edu/jhu/ece/iacl/plugins/quantitative/EstimateMTRseries.java
./edu/jhu/ece/iacl/plugins/quantitative/EstimateT1FromDoubleAngle.java
./edu/jhu/ece/iacl/plugins/quantitative/EstimateT2FromDualEcho.java
./edu/jhu/ece/iacl/plugins/registration/.#MedicAlgorithmTransformVolume.java.1.5
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmConstrainedFLIRT.java
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmFLIRT.java
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmFLIRTCollection.java
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmMultiAtlasReg.java
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmMultiDeformVolume.java
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmTransformVolume.java
./edu/jhu/ece/iacl/plugins/registration/MedicAlgorithmVABRA.java
./edu/jhu/ece/iacl/plugins/spectro/.#JistMSWASSR.java.1.1
./edu/jhu/ece/iacl/plugins/spectro/JistMSWASSR.java
./edu/jhu/ece/iacl/plugins/utilities/file/AddToFileCollection.java
./edu/jhu/ece/iacl/plugins/utilities/file/FileCollectionToPins.java
./edu/jhu/ece/iacl/plugins/utilities/file/FileCollectionToVolumeCollection.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmChooseFileRegEx.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmChooseVolumeRegEx.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmConcatArrayDoubleTextLists.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmFibersToVtk.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmIdentifySubject.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmSurfaceConverter.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmVolumeConverter.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmVolumeConverter2.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmVolumeConverter4D.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmVolumeListOrganizer.java
./edu/jhu/ece/iacl/plugins/utilities/file/MedicAlgorithmZip.java
./edu/jhu/ece/iacl/plugins/utilities/file/VolumeDirectoryNoIter.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmFloatsToPoint.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmSerializeSurfaces.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmSerializeVolumes.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmSurfaceSplitter.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmValueEquals.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmValueGreaterThan.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmValueInRange.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmValueLessThan.java
./edu/jhu/ece/iacl/plugins/utilities/logic/MedicAlgorithmVolumeSplitter.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmArithmetic.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmImageCalculator.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmImageCalculatorBatch.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmImageCalculatorModified.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmImageMath.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmKLDivergence.java
./edu/jhu/ece/iacl/plugins/utilities/math/MedicAlgorithmMath.java
./edu/jhu/ece/iacl/plugins/utilities/roi/AlgorithmJointROIStats.java
./edu/jhu/ece/iacl/plugins/utilities/roi/AlgorithmROIStats.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmCombineSurfaceComponents.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmCombineSurfaces.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmCopyEmbeddedData.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmEmbedSurface.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmExtractSurfaceComponent.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmReshapePoints.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmReshapeSurface.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmSurfaceHistogram.java
./edu/jhu/ece/iacl/plugins/utilities/surface/MedicAlgorithmSurfaceToVolumeConverter.java
./edu/jhu/ece/iacl/plugins/utilities/volume/AlgorithmVolumeFileCollectionTo3D.java
./edu/jhu/ece/iacl/plugins/utilities/volume/CombinedSlabCollectionToVolumeCollection.java
./edu/jhu/ece/iacl/plugins/utilities/volume/GetImageDimensions.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmAddToVolCollection.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmCombineSubimages.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmCombineVolumeComponents.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmCombineVolumes.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmConcatMultiImages.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmCrop.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmDimensions.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmExtractAllComponents.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmExtractFileCollectionComponents.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmExtractVolumeComponent.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmFindEqualVolume.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmIsotropicReslice.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmMaskVectorImage.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmMatchAllImages.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmMultiCrop.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmReverseComponents.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmSetHeaders.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmSlabsToVolume.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmSplitImage.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmThreshold.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmUncrop.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmVolumeHistogram.java
./edu/jhu/ece/iacl/plugins/utilities/volume/MedicAlgorithmVolumeToSlabs.java
./edu/jhu/ece/iacl/plugins/utilities/volume/VolumeCensorRange.java
./edu/jhu/ece/iacl/plugins/utilities/volume/VolumeCollectionToCombinedSlabCollection.java
