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Tool List | Attribute Comparison | Tool/Resource Table  1. 1000 Functional Connectomes Project - On behalf of the ‘1000 Functional Connectomes’ Project, we are pleased to announce the unrestricted public release of 1200+ ‘resting state’ functional MRI (R-fMRI) datasets independently collected at 33 sites. All datasets have been generously donated by the principal investigators from the member sites, for the purpose of providing the broader imaging community complete access to a large-scale functional imaging dataset. Age, sex and imaging center information are provided for each of the datasets. In accordance with HIPAA guidelines, all datasets are anonymous, with no protected health information included. We anticipate this data-sharing effort will equip researchers with a means of exploring and refining R-fMRI approaches, and facilitate the growing ethos of sharing and collaboration.
Disclaimer: The '1000 Functional Connectomes Project' datasets are provided freely without assurance of quality or appropriateness for usage.
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| | User Ratings & Reviews ( Number of Reviews: 2 ) Read Reviews |
- Category: Data
- Development Status: 5 - Production/Stable
- Intended Audience: End Users
- License: Attribution
- Natural Language: English
- Operating System: OS Independent
- Supported Data Format: NIfTI-1
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Activity Percentile: 100.00
Activity Ranking: 1.00
Register Date: 2009-11-24 16:57 |
2. 3D Interactive Chemical Shift Imaging - 3D Interactive Chemical Shift Imaging (3DiCSI) is a user-friendly and comprehensive software program for multi-dimensional CSI data visualization, spectral processing, localization, quantification and multi-variate analysis.
| | User Ratings & Reviews ( Number of Reviews: 0 ) Read Reviews |
- Category: Quantification , Spatial Transformation , Statistical Operation , Temporal Transformation , Visualization
- Development Status: 5 - Production/Stable
- Environment: Win32 (MS Windows)
- Intended Audience: End Users
- License: Columbia University Non-Commercial Software License Agreement
- Natural Language: English
- Operating System: Windows
- Programming Language: C++
- Supported Data Format: DICOM , Other Format
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Activity Percentile: 22.95
Activity Ranking: 95.00
Register Date: 2007-12-11 12:27 |
3. 3D Slicer - An extensible, cross-platform, totally open research platform for image computing.
| | User Ratings & Reviews ( Number of Reviews: 6 ) Read Reviews |
- Category: Tensor Metric , Morphology , Volume Measurement , Image-to-Image , Resampling , Warping , Tractography , Visualization , Platform or Development Environment
- Development Status: 5 - Production/Stable
- Environment: Win32 (MS Windows) , X11 Applications
- Intended Audience: Developers , End Users
- License: 3D Slicer License
- Natural Language: English
- Operating System: MacOS , Windows , Linux
- Programming Language: C++ , Python , Tcl/Tk
- Supported Data Format: ANALYZE , bshort/bfloat , DICOM , MGH/MGZ , NIfTI-1 , Nrrd , Other Format
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Activity Percentile: 64.75
Activity Ranking: 44.00
Register Date: 2007-08-17 06:00 |
4. 3DSlicerLupusLesionModule - The purpose of this Slicer3 module is to provide a capability for performing white matter lesion classification and summary.
| | User Ratings & Reviews ( Number of Reviews: 0 ) Read Reviews |
- License: 3D Slicer License
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Activity Percentile: 74.59
Activity Ranking: 32.00
Register Date: 2008-11-12 07:23 |
5. ABC (Atlas Based Classification) - ABC (Atlas Based Classification) is a full segmentation pipeline developed and used at University of North Carolina and University of Utah for brain MRIs. The processing pipeline includes image registration, filtering, and inhomogeneity correction. The tool is cross-platform and can be run within 3D Slicer or as a stand-alone program.
| | User Ratings & Reviews ( Number of Reviews: 0 ) Read Reviews |
- Category: Segmentation
- Development Status: 4 - Beta
- License: 3D Slicer License
- Operating System: Windows , Linux
- Programming Language: C++
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Activity Percentile: 46.72
Activity Ranking: 66.00
Register Date: 2009-12-03 15:14 |
6. Advanced Normalization Tools - Advanced Normalization Tools (ANTS) : Image registration with variable transformation models (elastic, diffeomorphic, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, optical flow). Designed for neuroscience and medical imaging researchers and users. Special capabilities include symmetric diffeomorphic normalization, optimal template creation and user-guided normalization.
| | User Ratings & Reviews ( Number of Reviews: 2 ) Read Reviews |
- Category: Algorithm or Reusable Library , Atlas Application , Morphology , Segmentation , Registration , Temporal Transformation
- Development Status: 5 - Production/Stable
- Intended Audience: End Users
- License: BSD License
- Natural Language: English
- Operating System: OS Independent
- Programming Language: C++
- Supported Data Format: ANALYZE , DICOM , NIfTI-1 , Other Format
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Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-06-27 12:29 |
7. AFNI - AFNI is a set of C programs for processing, analyzing, and displaying FMRI data. It runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X. It is available free for research purposes.
| | User Ratings & Reviews ( Number of Reviews: 17 ) Read Reviews |
- Category: Response Monitoring , Tensor Metric , Volumetric Analysis , Region of Interest , Registration , Resampling , Nonlinear , Surface Analysis , Temporal Convolution - Deconvolution , Haemodynamic Response , Image Display , Rendering
- Development Status: 6 - Mature
- Environment: X11 Applications
- Intended Audience: Developers , End Users
- License: Freeware
- Natural Language: English
- Operating System: MacOS , Linux
- Programming Language: C , Python
- Supported Data Format: AFNI BRIK , ANALYZE , DICOM , GIfTI , MINC , NIfTI-1
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Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2007-05-07 09:22 |
8. Allen Brain Atlas API - API and demo application for the ABA Mouse Brain data. Data available via the API includes download high resolution images, expression data from a 3D volume, 3D coordinates of the Allen Reference Atlas, and searching genes with similar gene expression profiles using NeuroBlast.
| - Category: Atlas Application
- Development Status: 5 - Production/Stable
- License: Other/Proprietary License
- Other Keywords: api, Computational neuroscience, gene expression, mouse brain, neuroanatomy, Neuroimaging, neuroinformatics
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Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2009-08-11 14:40 |
9. Analyze - Analyze provides an integrated, comprehensive set of tools for the visualization, segmentation, registration and analysis of multidimensional biomedical imaging data. With Analyze, both anatomic structure and associated function can be studied and fused together for synergistic display and measurement of important structure-to-function relationships.
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- Category: Volumetric Analysis , Region Growing , Region of Interest , Registration , Diffusion MR Fiber Tracking , Rendering
- Development Status: 6 - Mature
- Environment: Win32 (MS Windows) , X11 Applications
- Intended Audience: End Users
- License: Analyze license
- Natural Language: English
- Operating System: MacOS , Windows , Linux , SunOS/Solaris
- Programming Language: C
- Supported Data Format: ANALYZE , DICOM , NIfTI-1 , Other Format , VRML
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Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2009-11-06 13:37 |
10. Anatomist - Anatomist is a software for interactive visualization of multimodal data and for manipulation of structured 3D objects. It allows to build scenes that merge or combine images, meshes, regions of interest, fibers, textures, color palettes, referential changes, etc. A user can interact in 3D and in real time with the objects of an Anatomist scene: change point of view, select objects, add/supress objects, change colors, draw regions of interests, do manual registration, etc.
| | User Ratings & Reviews ( Number of Reviews: 0 ) Read Reviews |
- Category: Visualization
- Development Status: 6 - Mature
- Environment: Win32 (MS Windows) , X11 Applications
- Intended Audience: Developers , End Users
- License: CeCill v2
- Natural Language: English , French
- Operating System: MacOS , Windows , Linux
- Programming Language: C++ , Python
- Supported Data Format: ANALYZE , DICOM , MINC , NIfTI-1 , Other Format
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Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2009-04-06 03:20 |
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