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1. 1000 Functional Connectomes Project - ATTENTION: The 1000 Functional Connectomes Project has a new home page at NITRC. Please visit us at: http://fcon_1000.projects.nitrc.org or simply click on 'DOWNLOAD NOW' below to be redirected.
 
User Ratings & Reviews  ( Number of Reviews: 5 )    Read Reviews
Overall: 5 out of 5Installation: 5 out of 5Documentation: 4 out of 5
  • Category: Data Filter Get Information
  • Development Status: Production/Stable Filter Get Information
  • Domain: MR Filter Get Information
  • Intended Audience: End Users Filter Get Information
  • License: Attribution Non-Commercial Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: OS Independent Filter Get Information
  • Supported Data Format: NIfTI-1 Filter Get Information
 Activity Percentile: 99.33
Activity Ranking: 2.00
Register Date: 2009-11-24 16:57
2. 3d Brain Atlas Reconstructor - 3d Brain Atlas Reconstructor (3dBAR, http://www.3dbar.org) is a software package for reconstructing three-dimensional models of brain structures from 2-D delineations using a customizable and reproducible workflow. 3dBAR also works as an on-line service (http://service.3dbar.org) offering a variety of functions for the hosted datasets: - downloading reconstructions of desired brain structures in predefined quality levels in various supported formats as well as created using customizable settings, - previewing models as bitmap thumbnails and (for webGL enabled browsers) interactive manipulation (zooming, rotating, etc.) of the structures, - downloading slides from available datasets as SVG drawings. 3dBAR service can also be used by other websites or applications to enhance their functionality. Check http://www.3dbar.org for detailed description of the software and the latest releases.
 
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  • Category: Web Service Filter Get Information, Algorithm or Reusable Library Filter Get Information, Atlas Application Filter Get Information, Three Dimensional Display Filter Get Information, Workflow Filter Get Information
  • Development Status: Beta Filter Get Information
  • Environment: Console (Text Based) Filter Get Information, Web Environment Filter Get Information, Gnome Filter Get Information
  • Intended Audience: Developers Filter Get Information, End Users Filter Get Information
  • License: GNU General Public License (GPL) Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: Linux Filter Get Information
  • Programming Language: Python Filter Get Information
  • Supported Data Format: NIfTI-1 Filter Get Information, Other Format Filter Get Information, VRML Filter Get Information
 Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2011-09-29 11:00
3. 3D Interactive Chemical Shift Imaging - 3D Interactive Chemical Shift Imaging (3DiCSI) is a user-friendly and comprehensive software program for multi-dimensional CSI data visualization, spectral processing, localization, quantification and multi-variate analysis.
 
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  • Category: Quantification Filter Get Information, Spatial Transformation Filter Get Information, Statistical Operation Filter Get Information, Temporal Transformation Filter Get Information, Visualization Filter Get Information
  • Development Status: Production/Stable Filter Get Information
  • Environment: Win32 (MS Windows) Filter Get Information
  • Intended Audience: End Users Filter Get Information
  • License: Columbia University Non-Commercial Software License Agreement Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: Windows Filter Get Information
  • Programming Language: C++ Filter Get Information
  • Supported Data Format: DICOM Filter Get Information, Other Format Filter Get Information
 Activity Percentile: 33.33
Activity Ranking: 101.00
Register Date: 2007-12-11 12:27
4. 3D Slicer - An extensible, cross-platform, totally open research platform for image computing.
 
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Overall: 4.5 out of 5Installation: 4.5 out of 5Documentation: 4.5 out of 5
  • Category: Tensor Metric Filter Get Information, Morphology Filter Get Information, Volume Measurement Filter Get Information, Image-to-Image Filter Get Information, Resampling Filter Get Information, Warping Filter Get Information, Tractography Filter Get Information, Visualization Filter Get Information, Platform or Development Environment Filter Get Information
  • Development Status: Production/Stable Filter Get Information
  • Domain: CT Filter Get Information, MR Filter Get Information, PET/SPECT Filter Get Information
  • Environment: Win32 (MS Windows) Filter Get Information, X11 Applications Filter Get Information
  • Intended Audience: Developers Filter Get Information, End Users Filter Get Information
  • License: 3D Slicer License Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: MacOS Filter Get Information, Windows Filter Get Information, Linux Filter Get Information
  • Programming Language: C++ Filter Get Information, Python Filter Get Information, Tcl/Tk Filter Get Information
  • Supported Data Format: ANALYZE Filter Get Information, bshort/bfloat Filter Get Information, DICOM Filter Get Information, MGH/MGZ Filter Get Information, NIfTI-1 Filter Get Information, Nrrd Filter Get Information, Other Format Filter Get Information
 Activity Percentile: 78.00
Activity Ranking: 34.00
Register Date: 2007-08-17 06:00
5. 3DSlicerLupusLesionModule - The purpose of this Slicer3 module is to provide a capability for performing white matter lesion classification and summary.
 
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  • License: 3D Slicer License Filter Get Information
 Activity Percentile: 67.33
Activity Ranking: 50.00
Register Date: 2008-11-12 07:23
6. ABC (Atlas Based Classification) - ABC (Atlas Based Classification) is a comprehensive processing pipeline developed and used at University of North Carolina and University of Utah for brain MRIs. The processing pipeline includes image registration, filtering, segmentation and inhomogeneity correction. The tool is cross-platform and can be run within 3D Slicer or as a stand-alone program. The image segmentation algorithm is based on the EMS software developed by Koen van Leemput.
 
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  • Category: Segmentation Filter Get Information
  • Development Status: Beta Filter Get Information
  • License: 3D Slicer License Filter Get Information
  • Operating System: Windows Filter Get Information, Linux Filter Get Information
  • Programming Language: C++ Filter Get Information
 Activity Percentile: 40.67
Activity Ranking: 90.00
Register Date: 2009-12-03 15:14
7. ABSORB for groupwise registration - This software package implements ABSORB: Atlas Building by Self-Organized Registration and Bundling – an algorithm for effective groupwise registration, which has been published as: Hongjun Jia, Guorong Wu, Qian Wang, Dinggang Shen, "ABSORB: Atlas Building by Self-Organized Registration and Bundling", NeuroImage, Vol. 51, No. 3, 1 July 2010, pp. 1057-1070. The package is available free to the public for the academic research purpose at http://bric.unc.edu/ideagroup/free-softwares/ . The required input is a set of 3D MR intensity images (in Analyze format with paired .hdr and .img files) with a text file (.txt) listing all header file (.hdr) names. The output is the set of registered images together with the corresponding dense deformation fields. This software has been tested on Windows XP (32-bit) and Linux (64-bit, kernel version 2.6.18-194.el5). This software was developed in IDEA group in UNC-Chapel Hill. For more information, please visit our lab at http://bric.unc.edu/ideagroup .
 
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Overall: No votesInstallation: No votesDocumentation: No votes
  • Category: Algorithm or Reusable Library Filter Get Information, Intermodal Filter Get Information, Intersubject Filter Get Information, Intrasubject Filter Get Information, Image-to-Template Filter Get Information, Affine Warp Filter Get Information, Nonlinear Warp Filter Get Information
  • Development Status: Alpha Filter Get Information, Beta Filter Get Information, Production/Stable Filter Get Information
  • Environment: Other Environment Filter Get Information, Win32 (MS Windows) Filter Get Information, X11 Applications Filter Get Information
  • Intended Audience: Developers Filter Get Information, End Users Filter Get Information, Other Audience Filter Get Information, System Administrators Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: Windows 95/98/2000 Filter Get Information, Windows NT/2000 Filter Get Information, Windows Vista Filter Get Information, Windows XP Filter Get Information, Linux Filter Get Information
  • Programming Language: C Filter Get Information, C++ Filter Get Information, Other Programming Language Filter Get Information
  • Supported Data Format: ANALYZE Filter Get Information, Microsoft Word Document Filter Get Information, PDF - Portable Document Format Filter Get Information
 Activity Percentile: 49.33
Activity Ranking: 77.00
Register Date: 2010-07-27 11:54
8. ADNI - Data collected as part of the ADNI study are freely available to authorized investigators, through the Image Data Archive (IDA). Information about obtaining access to ADNI data may be found in the How to Apply for Data section (http://adni.loni.ucla.edu/about-data-samples/). For more detailed information about accessing data from the IDA, please review the IDA User Manual. The following ADNI data types are available: Clinical: Demographics, Clinical Assessments, Cognitive Assessments); Imaging: MRI: Raw, pre- and post- processed image files; PET: Raw, pre- and post- processed image files; fMRI: (ADNI GO); DTI: (ADNI GO); Chemical Biomarker: Laboratory Results; Genetic: Illumina SNP genotyping; Image Analysis Results: Numeric results derived from image analyses. The ADNI database is managed and housed by the Laboratory of Neuro Imaging (http://www.LONI.ucla.edu/) at UCLA.
 
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  • Category: Data Filter Get Information, Database Filter Get Information
  • Development Status: Mature Filter Get Information
  • Domain: MR Filter Get Information, PET/SPECT Filter Get Information
  • Environment: Web Environment Filter Get Information
  • Intended Audience: End Users Filter Get Information
  • License: ADNI License Filter Get Information
  • Natural Language: English Filter Get Information
  • Pipelines and Workflows Supported: LONI Pipeline Filter Get Information
  • Supported Data Format: ANALYZE Filter Get Information, DICOM Filter Get Information, NIfTI-1 Filter Get Information, Other Format Filter Get Information
 Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2011-03-28 15:58
9. Advanced Normalization Tools - Advanced Normalization Tools (ANTS) : Image registration with variable transformation models (elastic, diffeomorphic, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, optical flow). Designed for neuroscience and medical imaging researchers and users. Special capabilities include symmetric diffeomorphic normalization, optimal template creation and user-guided normalization.
 
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Overall: 5 out of 5Installation: 4 out of 5Documentation: 4 out of 5
  • Category: Algorithm or Reusable Library Filter Get Information, Atlas Application Filter Get Information, Morphology Filter Get Information, Segmentation Filter Get Information, Registration Filter Get Information, Temporal Transformation Filter Get Information
  • Development Status: Production/Stable Filter Get Information
  • Intended Audience: End Users Filter Get Information
  • License: BSD License Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: OS Independent Filter Get Information
  • Programming Language: C++ Filter Get Information
  • Supported Data Format: ANALYZE Filter Get Information, DICOM Filter Get Information, NIfTI-1 Filter Get Information, Other Format Filter Get Information
 Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-06-27 12:29
10. AFNI - AFNI is a set of C programs for processing, analyzing, and displaying FMRI data. It runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X. It is available free for research purposes.
 
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Overall: 4.5 out of 5Installation: 3.5 out of 5Documentation: 3.5 out of 5
  • Category: Response Monitoring Filter Get Information, Tensor Metric Filter Get Information, Volumetric Analysis Filter Get Information, Region of Interest Filter Get Information, Registration Filter Get Information, Resampling Filter Get Information, Nonlinear Filter Get Information, Surface Analysis Filter Get Information, Temporal Convolution - Deconvolution Filter Get Information, Haemodynamic Response Filter Get Information, Image Display Filter Get Information, Rendering Filter Get Information
  • Development Status: Mature Filter Get Information
  • Environment: X11 Applications Filter Get Information
  • Intended Audience: Developers Filter Get Information, End Users Filter Get Information
  • License: Freeware Filter Get Information
  • Natural Language: English Filter Get Information
  • Operating System: MacOS Filter Get Information, Linux Filter Get Information
  • Programming Language: C Filter Get Information, Python Filter Get Information
  • Supported Data Format: AFNI BRIK Filter Get Information, ANALYZE Filter Get Information, DICOM Filter Get Information, GIfTI Filter Get Information, MINC Filter Get Information, NIfTI-1 Filter Get Information
 Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2007-05-07 09:22
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