Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1072867
2
MRIcron
1007086
3
BIDScoin
868916
4
ITK-SNAP
475306
5
FCP/INDI PRIVATE SITE
394224
6
IIT Human Brain Atlas (v.5.0)
235388
7
CONN : functional connectivity toolbox
219446
8
MRIcroGL
210956
9
fMRI-CPCA
209241
10
1000 Functional Connectomes Project
185161
11
BrainNet Viewer
128085
12
BXH/XCEDE Tools
106550
13
DTI-TK
98711
14
NIDB - Neuroinformatics Database
97588
15
age-ility
88979
16
IBSR
83753
17
BioImage Suite
83036
18
Multi-Modal MRI Reproducibility Resource
78188
19
Solar Eclipse Imaging Genetics tools
77332
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
77332
21
JIST: Java Image Science Toolkit
72990
22
BrainFlow
70728
23
WFU_PickAtlas
67122
24
GIFTI
58517
25
NITRC Computational Environment (NITRC-CE)
56051
26
PANDA: a pipeline tool for diffusion MRI
55172
27
The Neuro Bureau
52331
28
3T DWI test-retest reliability dataset
49635
29
Functional Imaging BIRN
49331
30
Multimodal Visual Consciousness Study Dataset
44864
31
TOADS-CRUISE Brain Segmentation Tools
43814
32
fNIRS Data Analysis Environment
42825
33
Generalized PPI Toolbox
42620
34
QuickNII - Serial section aligner to volumetric atlases
40769
35
EEGLAB
40099
36
BrainMap Database
38214
37
FreeSurfer
37991
38
Network-Based Statistic (NBS)
37811
39
MIITRA atlas
36882
40
NeuroImaging Analysis Kit (NIAK)
34892
41
UNC 0-1-2 Infant Atlases
33921
42
Brain Biomechanics Imaging Resources
32835
43
Standard Amygdalar fMRI Probe Tasks
32650
44
DWI/DTI Quality Control Tool: DTIPrep
30842
45
Homer2
30782
46
Graph Theory GLM (GTG) MATLAB Toolbox
30592
47
TumorSim
29565
48
NYU CSC TestRetest
28105
49
NeuroDebian
28062
50
CBS High-Res Brain Processing Tools
27596
51
BrainVisa Morphologist extensions
27493
52
Anima
27401
53
Melbourne Subcortex Atlas
27232
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
26062
55
XNAT Extras
25972
56
4D UNC Neonatal and Infant Cortical Surface Atlases
25055
57
SPHARM-PDM Toolbox
23820
58
Neuroimaging Made Easy Blog
23337
59
SRI24 Atlas: Normal Adult Brain Anatomy
21804
60
BrainMask Volume Processing Tool
21190
61
CANDI Neuroimaging Access Point
20946
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
20546
63
Data Format Tools
20180
64
Fast Nonlocal Means for MRI denoising
20153
65
Vaa3D and Vaa3D-Neuron
19988
66
Mango
19601
67
Surf Ice
19367
68
3DSlicerLupusLesionModule
19197
69
Group ICA Toolbox (GIFT and EEGIFT)
18942
70
Automatic Registration Toolbox
18927
71
ShapePopulationViewer
18716
72
MRtrix
18497
73
MITK Diffusion
18461
74
Awake Rat rsfMRI Database
18164
75
GRETNA
17803
76
Subject Order-Independent Group ICA
17623
77
Talairach Daemon
17502
78
Hammer And WML Modules for 3D Slicer
17437
79
ANDA
17288
80
DCP：Diffusion Connectome Pipeline
17059
81
Diffusion Toolkit / TrackVis
16979
82
Freesurfer fsaverage
16934
83
Human Imaging Database (HID)
16904
84
AutoSeg
16740
85
Spatially Constrained Parcellation
16711
86
BrainSuite
16575
87
Computational Morphometry Toolkit (CMTK)
16571
88
ENIGMA-DTI pipeline
16555
89
3D Slicer
16321
90
NeuroDOT
15432
91
MARS (Multi-Atlas Robust Segmentation)
15226
92
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15161
93
Multi-site Frequency Drift MR Spectroscopy
14951
94
FSL
14639
95
ReproNim: A Center for Reproducible Neuroimaging Computation
14134
96
Artifact Detection Tools (ART)
13926
97
Brainstorm
13847
98
Maps4Mipav (Exploratory JIST)
13707
99
ABSORB for groupwise registration
13587
100
Nighres
13421