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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron500248      
  2ITK-SNAP178437      
  31000 Functional Connectomes Project109417      
  4DTI-TK71933      
  5CONN : functional connectivity toolbox51869      
  6EEGLAB38347      
  7FreeSurfer37041      
  8Nilearn34608      
  9WFU_PickAtlas31339      
  10TOADS-CRUISE Brain Segmentation Tools28440      
  11DSI Studio28439      
  12Multi-Modal MRI Reproducibility Resource26790      
  13IIT Human Brain Atlas (v.4.1)22720      
  14MRIcroGL19037      
  15BrainNet Viewer18429      
  16IBSR16965      
  17Functional Imaging BIRN16773      
  18JIST: Java Image Science Toolkit16289      
  19PANDA: a pipeline tool for diffusion MRI15976      
  20The Neuro Bureau14447      
  21Generalized PPI Toolbox13564      
  22Solar Eclipse Imaging Genetics tools12071      
  23MINC - Medical Image NetCDF11521      
  24NeuroDebian11506      
  25GIFTI11433      
  26BrainVisa Morphologist extensions11364      
  27MITK Diffusion10295      
  28BioImage Suite10205      
  293D Slicer10138      
  30Mango9976      
  31BrainMap Database9211      
  32Talairach Daemon8981      
  33MRtrix8927      
  34BrainVISA8212      
  35fMRI-CPCA8181      
  36Automatic Registration Toolbox8038      
  37Neuroimaging Made Easy Blog8028      
  38Diffusion Toolkit / TrackVis7641      
  39Subject Order-Independent Group ICA7512      
  40fNIRS Data Analysis Environment7409      
  41XNAT Extras6909      
  42BrainMask Volume Processing Tool6719      
  43Artifact Detection Tools (ART)6701      
  44NYU CSC TestRetest6247      
  45Spatially Constrained Parcellation6116      
  46Data Format Tools6085      
  47FSL5947      
  483DSlicerLupusLesionModule5817      
  49Hammer And WML Modules for 3D Slicer5757      
  50Group ICA Toolbox (GIFT and EEGIFT)5601      
  51Computational Morphometry Toolkit (CMTK)5401      
  52BrainVoyager5372      
  53Network-Based Statistic (NBS)5220      
  54LONI Pipeline Environment5136      
  55UNC 0-1-2 Infant Atlases5127      
  56SRI24 Atlas: Normal Adult Brain Anatomy4920      
  57NeuroImaging Analysis Kit (NIAK)4904      
  58BrainVoyager Brain Tutor4754      
  59Source Information Flow Toolbox4658      
  60Human Imaging Database (HID)4476      
  61Center for Functional Neuroimaging Tech4424      
  62GRETNA4393      
  63dcm2nii4307      
  64SPM4159      
  65Vaa3D and Vaa3D-Neuron3921      
  66GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3886      
  67ABSORB for groupwise registration3851      
  68TumorSim3782      
  69MATLAB Tutorial on Diffusion Tensor MRI3665      
  70BrainSuite3663      
  71NIfTI3660      
  72FBIRN Image Processing Scripts (FIPS)3618      
  733T DWI test-retest reliability dataset3585      
  74HAMMER: Deformable Registration3490      
  75SPHARM-PDM Toolbox3483      
  76MRI Defacer3428      
  772008 MICCAI MS Lesion Segmentation Challenge3388      
  78BXH/XCEDE Tools3287      
  79ABC (Atlas Based Classification)3282      
  80CBS High-Res Brain Processing Tools3271      
  81Maps4Mipav (Exploratory JIST) 3251      
  82FMRIpower3239      
  83REX3163      
  84DWI/DTI Quality Control Tool: DTIPrep3110      
  85Optseq - fMRI Event Scheduler2995      
  86age-ility2989      
  87CANDI Neuroimaging Access Point2966      
  88Pipeline system for Octave and Matlab2936      
  89Task Independent Fluctuations Discussion2922      
  90LONI Debabeler2919      
  91Homer22806      
  92DicomBrowser2805      
  93GLIRT2802      
  94MARS (Multi-Atlas Robust Segmentation)2778      
  95iBEAT2720      
  96Licensing2641      
  97Robust Brain Extraction (ROBEX)2636      
  98JIP fMRI Analysis Toolkit2581      
  99MIPAV2529      
  100XNAT2443