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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  31000 Functional Connectomes Project95803      
  6CONN : functional connectivity toolbox37914      
  9TOADS-CRUISE Brain Segmentation Tools27160      
  10DSI Studio26099      
  11Multi-Modal MRI Reproducibility Resource22979      
  13IIT Human Brain Atlas (v.4.1)18096      
  14JIST: Java Image Science Toolkit14959      
  15Functional Imaging BIRN14906      
  16BrainNet Viewer14082      
  17PANDA: a pipeline tool for diffusion MRI13229      
  18The Neuro Bureau12881      
  20Generalized PPI Toolbox10721      
  21MINC - Medical Image NetCDF10431      
  23BrainVisa Morphologist extensions9641      
  283D Slicer8575      
  29Talairach Daemon8547      
  30BrainMap Database8496      
  31Solar Eclipse Imaging Genetics tools8408      
  33MITK Diffusion7561      
  34Automatic Registration Toolbox7535      
  35BioImage Suite7286      
  36Subject Order-Independent Group ICA7199      
  38Diffusion Toolkit / TrackVis6583      
  39Neuroimaging Made Easy Blog6277      
  40BrainMask Volume Processing Tool6077      
  41Artifact Detection Tools (ART)5822      
  42XNAT Extras5757      
  45NYU CSC TestRetest5214      
  46Hammer And WML Modules for 3D Slicer5122      
  48Data Format Tools5079      
  49Group ICA Toolbox (GIFT and EEGIFT)5024      
  50fNIRS Data Analysis Environment4805      
  51LONI Pipeline Environment4737      
  52Spatially Constrained Parcellation4715      
  53Computational Morphometry Toolkit (CMTK)4557      
  54SRI24 Atlas: Normal Adult Brain Anatomy4539      
  55BrainVoyager Brain Tutor4163      
  56NeuroImaging Analysis Kit (NIAK)4048      
  57Human Imaging Database (HID)4045      
  58Network-Based Statistic (NBS)3945      
  59UNC 0-1-2 Infant Atlases3897      
  60Center for Functional Neuroimaging Tech3630      
  61ABSORB for groupwise registration3323      
  62FBIRN Image Processing Scripts (FIPS)3319      
  63Source Information Flow Toolbox3311      
  65MATLAB Tutorial on Diffusion Tensor MRI3276      
  67HAMMER: Deformable Registration3182      
  70Maps4Mipav (Exploratory JIST) 3011      
  71ABC (Atlas Based Classification)2953      
  72SPHARM-PDM Toolbox2934      
  73MRI Defacer2914      
  74BXH/XCEDE Tools2856      
  76Optseq - fMRI Event Scheduler2699      
  78GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity2626      
  79CANDI Neuroimaging Access Point2610      
  80Task Independent Fluctuations Discussion2593      
  81Vaa3D and Vaa3D-Neuron2592      
  83LONI Debabeler2587      
  84Pipeline system for Octave and Matlab2582      
  86DWI/DTI Quality Control Tool: DTIPrep2504      
  87JIP fMRI Analysis Toolkit2358      
  88Waxholm Space Atlas2336      
  89CBS High-Res Brain Processing Tools2323      
  902008 MICCAI MS Lesion Segmentation Challenge2318      
  92MRI Studio2198      
  94PESTICA & SLOMOCO: physio and motion correction tools2148      
  96Numerical Fibre Generator (NFG)2111      
  99MARS (Multi-Atlas Robust Segmentation)2030