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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron493392      
  2ITK-SNAP172269      
  31000 Functional Connectomes Project106823      
  4DTI-TK71541      
  5CONN : functional connectivity toolbox49499      
  6EEGLAB38308      
  7FreeSurfer36970      
  8Nilearn32228      
  9WFU_PickAtlas30761      
  10TOADS-CRUISE Brain Segmentation Tools28285      
  11DSI Studio28207      
  12Multi-Modal MRI Reproducibility Resource26184      
  13IIT Human Brain Atlas (v.4.1)21980      
  14BrainNet Viewer17453      
  15MRIcroGL17245      
  16Functional Imaging BIRN16492      
  17IBSR16420      
  18JIST: Java Image Science Toolkit16100      
  19PANDA: a pipeline tool for diffusion MRI15522      
  20The Neuro Bureau14201      
  21Generalized PPI Toolbox13154      
  22Solar Eclipse Imaging Genetics tools11382      
  23MINC - Medical Image NetCDF11344      
  24NeuroDebian11166      
  25BrainVisa Morphologist extensions11031      
  26GIFTI10926      
  273D Slicer9963      
  28Mango9765      
  29MITK Diffusion9610      
  30BioImage Suite9539      
  31BrainMap Database9074      
  32Talairach Daemon8938      
  33MRtrix8903      
  34BrainVISA8123      
  35Automatic Registration Toolbox7957      
  36fMRI-CPCA7947      
  37Neuroimaging Made Easy Blog7797      
  38Diffusion Toolkit / TrackVis7495      
  39Subject Order-Independent Group ICA7451      
  40fNIRS Data Analysis Environment6765      
  41XNAT Extras6659      
  42BrainMask Volume Processing Tool6599      
  43Artifact Detection Tools (ART)6579      
  44NYU CSC TestRetest6018      
  45Data Format Tools5937      
  46Spatially Constrained Parcellation5876      
  47FSL5839      
  483DSlicerLupusLesionModule5750      
  49Hammer And WML Modules for 3D Slicer5681      
  50Group ICA Toolbox (GIFT and EEGIFT)5531      
  51BrainVoyager5353      
  52Computational Morphometry Toolkit (CMTK)5276      
  53LONI Pipeline Environment5079      
  54Network-Based Statistic (NBS)4987      
  55UNC 0-1-2 Infant Atlases4881      
  56NeuroImaging Analysis Kit (NIAK)4834      
  57SRI24 Atlas: Normal Adult Brain Anatomy4831      
  58BrainVoyager Brain Tutor4677      
  59Source Information Flow Toolbox4441      
  60Human Imaging Database (HID)4402      
  61Center for Functional Neuroimaging Tech4278      
  62GRETNA4148      
  63SPM3990      
  64dcm2nii3883      
  65ABSORB for groupwise registration3783      
  66GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3715      
  67TumorSim3671      
  68Vaa3D and Vaa3D-Neuron3613      
  69MATLAB Tutorial on Diffusion Tensor MRI3612      
  70FBIRN Image Processing Scripts (FIPS)3579      
  71NIfTI3571      
  72BrainSuite3458      
  73SPHARM-PDM Toolbox3444      
  74HAMMER: Deformable Registration3424      
  75MRI Defacer3333      
  762008 MICCAI MS Lesion Segmentation Challenge3261      
  77ABC (Atlas Based Classification)3232      
  783T DWI test-retest reliability dataset3217      
  79Maps4Mipav (Exploratory JIST) 3190      
  80BXH/XCEDE Tools3139      
  81FMRIpower3130      
  82CBS High-Res Brain Processing Tools3078      
  83REX3063      
  84DWI/DTI Quality Control Tool: DTIPrep2973      
  85Optseq - fMRI Event Scheduler2930      
  86CANDI Neuroimaging Access Point2900      
  87Pipeline system for Octave and Matlab2894      
  88Task Independent Fluctuations Discussion2871      
  89LONI Debabeler2833      
  90GLIRT2784      
  91age-ility2678      
  92DicomBrowser2673      
  93MARS (Multi-Atlas Robust Segmentation)2634      
  94iBEAT2616      
  95Licensing2557      
  96JIP fMRI Analysis Toolkit2543      
  97MIPAV2498      
  98Robust Brain Extraction (ROBEX)2496      
  99Homer22477      
  100XNAT2408