Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
969499
2
Nilearn
937384
3
BIDScoin
642875
4
ITK-SNAP
464719
5
FCP/INDI PRIVATE SITE
380166
6
IIT Human Brain Atlas (v.5.0)
220601
7
fMRI-CPCA
206302
8
MRIcroGL
202840
9
CONN : functional connectivity toolbox
199226
10
1000 Functional Connectomes Project
183344
11
BrainNet Viewer
117255
12
DTI-TK
96435
13
BXH/XCEDE Tools
85080
14
IBSR
81597
15
NIDB - Neuroinformatics Database
81339
16
BioImage Suite
79484
17
age-ility
78467
18
Multi-Modal MRI Reproducibility Resource
75446
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
70593
20
WFU_PickAtlas
66408
21
Solar Eclipse Imaging Genetics tools
65752
22
JIST: Java Image Science Toolkit
63712
23
BrainFlow
59544
24
GIFTI
52639
25
PANDA: a pipeline tool for diffusion MRI
52212
26
The Neuro Bureau
50466
27
NITRC Computational Environment (NITRC-CE)
49850
28
Functional Imaging BIRN
46225
29
3T DWI test-retest reliability dataset
46080
30
TOADS-CRUISE Brain Segmentation Tools
41481
31
fNIRS Data Analysis Environment
41227
32
EEGLAB
40059
33
Generalized PPI Toolbox
38217
34
Multimodal Visual Consciousness Study Dataset
38147
35
FreeSurfer
37987
36
BrainMap Database
35806
37
QuickNII - Serial section aligner to volumetric atlases
35543
38
Network-Based Statistic (NBS)
33791
39
MIITRA atlas
32144
40
NeuroImaging Analysis Kit (NIAK)
31532
41
UNC 0-1-2 Infant Atlases
30859
42
Brain Biomechanics Imaging Resources
29214
43
Homer2
29024
44
NeuroDebian
26906
45
Anima
26588
46
DWI/DTI Quality Control Tool: DTIPrep
26459
47
NYU CSC TestRetest
26209
48
BrainVisa Morphologist extensions
26174
49
TumorSim
26070
50
XNAT Extras
24373
51
Graph Theory GLM (GTG) MATLAB Toolbox
24006
52
CBS High-Res Brain Processing Tools
22493
53
Melbourne Subcortex Atlas
22404
54
Neuroimaging Made Easy Blog
21994
55
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
21922
56
4D UNC Neonatal and Infant Cortical Surface Atlases
21885
57
SPHARM-PDM Toolbox
21304
58
SRI24 Atlas: Normal Adult Brain Anatomy
19363
59
Mango
19273
60
Data Format Tools
18943
61
Vaa3D and Vaa3D-Neuron
18738
62
Fast Nonlocal Means for MRI denoising
18700
63
Surf Ice
18591
64
BrainMask Volume Processing Tool
18569
65
Automatic Registration Toolbox
18434
66
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18321
67
MITK Diffusion
18299
68
CANDI Neuroimaging Access Point
18109
69
GRETNA
17494
70
Group ICA Toolbox (GIFT and EEGIFT)
17422
71
Talairach Daemon
16857
72
3DSlicerLupusLesionModule
16725
73
Diffusion Toolkit / TrackVis
16461
74
Subject Order-Independent Group ICA
16409
75
Awake Rat rsfMRI Database
16206
76
Spatially Constrained Parcellation
16201
77
3D Slicer
16199
78
DCP：Diffusion Connectome Pipeline
16130
79
Freesurfer fsaverage
15892
80
Computational Morphometry Toolkit (CMTK)
15874
81
BrainSuite
15674
82
Human Imaging Database (HID)
15393
83
MRtrix
15341
84
ShapePopulationViewer
15239
85
Hammer And WML Modules for 3D Slicer
15086
86
ENIGMA-DTI pipeline
14701
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14179
88
AutoSeg
14103
89
MARS (Multi-Atlas Robust Segmentation)
14051
90
FSL
14016
91
Brainstorm
13841
92
Artifact Detection Tools (ART)
13276
93
dcm2nii
13214
94
libminc - Medical Image NetCDF library
12868
95
Nighres
12570
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12264
97
ABSORB for groupwise registration
12244
98
NIfTI
12150
99
Maps4Mipav (Exploratory JIST)
12123
100
Task Independent Fluctuations Discussion
12049