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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron487392      
  2ITK-SNAP166565      
  31000 Functional Connectomes Project104994      
  4DTI-TK71157      
  5CONN : functional connectivity toolbox47329      
  6EEGLAB38279      
  7FreeSurfer36870      
  8Nilearn30956      
  9WFU_PickAtlas30342      
  10TOADS-CRUISE Brain Segmentation Tools28110      
  11DSI Studio28000      
  12Multi-Modal MRI Reproducibility Resource25664      
  13IIT Human Brain Atlas (v.4.1)21376      
  14BrainNet Viewer16485      
  15Functional Imaging BIRN16171      
  16JIST: Java Image Science Toolkit15879      
  17MRIcroGL15850      
  18IBSR15476      
  19PANDA: a pipeline tool for diffusion MRI15107      
  20The Neuro Bureau13971      
  21Generalized PPI Toolbox12788      
  22MINC - Medical Image NetCDF11206      
  23NeuroDebian10799      
  24Solar Eclipse Imaging Genetics tools10765      
  25BrainVisa Morphologist extensions10670      
  26GIFTI10585      
  273D Slicer9786      
  28Mango9626      
  29MITK Diffusion9336      
  30BioImage Suite9066      
  31BrainMap Database8980      
  32MRtrix8876      
  33Talairach Daemon8874      
  34BrainVISA8034      
  35Automatic Registration Toolbox7871      
  36fMRI-CPCA7773      
  37Neuroimaging Made Easy Blog7615      
  38Subject Order-Independent Group ICA7420      
  39Diffusion Toolkit / TrackVis7322      
  40BrainMask Volume Processing Tool6535      
  41fNIRS Data Analysis Environment6482      
  42XNAT Extras6476      
  43Artifact Detection Tools (ART)6464      
  44NYU CSC TestRetest5889      
  45Data Format Tools5791      
  46FSL5758      
  473DSlicerLupusLesionModule5712      
  48Spatially Constrained Parcellation5669      
  49Hammer And WML Modules for 3D Slicer5595      
  50Group ICA Toolbox (GIFT and EEGIFT)5451      
  51BrainVoyager5345      
  52Computational Morphometry Toolkit (CMTK)5128      
  53LONI Pipeline Environment5031      
  54Network-Based Statistic (NBS)4836      
  55SRI24 Atlas: Normal Adult Brain Anatomy4795      
  56NeuroImaging Analysis Kit (NIAK)4745      
  57UNC 0-1-2 Infant Atlases4691      
  58BrainVoyager Brain Tutor4619      
  59Human Imaging Database (HID)4340      
  60Source Information Flow Toolbox4288      
  61Center for Functional Neuroimaging Tech4147      
  62GRETNA3932      
  63SPM3865      
  64ABSORB for groupwise registration3714      
  65MATLAB Tutorial on Diffusion Tensor MRI3562      
  66TumorSim3558      
  67GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3540      
  68FBIRN Image Processing Scripts (FIPS)3537      
  69NIfTI3533      
  70dcm2nii3517      
  71Vaa3D and Vaa3D-Neuron3428      
  72HAMMER: Deformable Registration3383      
  73SPHARM-PDM Toolbox3356      
  74BrainSuite3312      
  75MRI Defacer3273      
  76ABC (Atlas Based Classification)3179      
  77Maps4Mipav (Exploratory JIST) 3147      
  78BXH/XCEDE Tools3101      
  792008 MICCAI MS Lesion Segmentation Challenge3097      
  80FMRIpower3048      
  813T DWI test-retest reliability dataset2980      
  82REX2959      
  83CBS High-Res Brain Processing Tools2898      
  84DWI/DTI Quality Control Tool: DTIPrep2896      
  85Optseq - fMRI Event Scheduler2894      
  86CANDI Neuroimaging Access Point2871      
  87Pipeline system for Octave and Matlab2853      
  88Task Independent Fluctuations Discussion2835      
  89LONI Debabeler2777      
  90GLIRT2758      
  91MARS (Multi-Atlas Robust Segmentation)2555      
  92DicomBrowser2555      
  93iBEAT2528      
  94JIP fMRI Analysis Toolkit2520      
  95Licensing2496      
  96MIPAV2473      
  97age-ility2412      
  98Robust Brain Extraction (ROBEX)2392      
  99XNAT2379      
  100MRI Studio2357