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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron473197      
  2ITK-SNAP155871      
  31000 Functional Connectomes Project100364      
  4DTI-TK70224      
  5CONN : functional connectivity toolbox42989      
  6EEGLAB38202      
  7FreeSurfer36551      
  8WFU_PickAtlas29520      
  9TOADS-CRUISE Brain Segmentation Tools27694      
  10DSI Studio27181      
  11Nilearn26649      
  12Multi-Modal MRI Reproducibility Resource24587      
  13IIT Human Brain Atlas (v.4.1)20012      
  14Functional Imaging BIRN15588      
  15BrainNet Viewer15363      
  16JIST: Java Image Science Toolkit15354      
  17PANDA: a pipeline tool for diffusion MRI14202      
  18IBSR14087      
  19The Neuro Bureau13491      
  20MRIcroGL13038      
  21Generalized PPI Toolbox11894      
  22MINC - Medical Image NetCDF10829      
  23NeuroDebian10189      
  24BrainVisa Morphologist extensions10145      
  25GIFTI9935      
  26Solar Eclipse Imaging Genetics tools9764      
  27Mango9294      
  283D Slicer9178      
  29MRtrix8816      
  30BrainMap Database8739      
  31Talairach Daemon8717      
  32MITK Diffusion8571      
  33BioImage Suite8106      
  34BrainVISA7831      
  35Automatic Registration Toolbox7713      
  36fMRI-CPCA7314      
  37Subject Order-Independent Group ICA7309      
  38Neuroimaging Made Easy Blog7014      
  39Diffusion Toolkit / TrackVis6987      
  40BrainMask Volume Processing Tool6300      
  41Artifact Detection Tools (ART)6161      
  42XNAT Extras6157      
  43fNIRS Data Analysis Environment5786      
  44FSL5602      
  453DSlicerLupusLesionModule5586      
  46NYU CSC TestRetest5563      
  47Data Format Tools5441      
  48Hammer And WML Modules for 3D Slicer5322      
  49Group ICA Toolbox (GIFT and EEGIFT)5285      
  50BrainVoyager5284      
  51Spatially Constrained Parcellation5210      
  52LONI Pipeline Environment4879      
  53Computational Morphometry Toolkit (CMTK)4871      
  54SRI24 Atlas: Normal Adult Brain Anatomy4686      
  55NeuroImaging Analysis Kit (NIAK)4486      
  56Network-Based Statistic (NBS)4423      
  57BrainVoyager Brain Tutor4323      
  58UNC 0-1-2 Infant Atlases4295      
  59Human Imaging Database (HID)4193      
  60Center for Functional Neuroimaging Tech3908      
  61Source Information Flow Toolbox3809      
  62SPM3594      
  63GRETNA3585      
  64ABSORB for groupwise registration3482      
  65FBIRN Image Processing Scripts (FIPS)3448      
  66MATLAB Tutorial on Diffusion Tensor MRI3439      
  67TumorSim3350      
  68NIfTI3347      
  69HAMMER: Deformable Registration3285      
  70GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3147      
  71SPHARM-PDM Toolbox3140      
  72MRI Defacer3101      
  73ABC (Atlas Based Classification)3067      
  74Maps4Mipav (Exploratory JIST) 3050      
  75BrainSuite2999      
  76BXH/XCEDE Tools2982      
  77Vaa3D and Vaa3D-Neuron2960      
  78FMRIpower2822      
  79Optseq - fMRI Event Scheduler2812      
  80REX2769      
  812008 MICCAI MS Lesion Segmentation Challenge2757      
  82Pipeline system for Octave and Matlab2745      
  83CANDI Neuroimaging Access Point2742      
  84dcm2nii2738      
  85DWI/DTI Quality Control Tool: DTIPrep2732      
  86Task Independent Fluctuations Discussion2718      
  87GLIRT2717      
  88LONI Debabeler2686      
  89CBS High-Res Brain Processing Tools2603      
  903T DWI test-retest reliability dataset2504      
  91JIP fMRI Analysis Toolkit2445      
  92MIPAV2399      
  93iBEAT2364      
  94age-ility2335      
  95DicomBrowser2335      
  96Licensing2328      
  97MARS (Multi-Atlas Robust Segmentation)2313      
  98XNAT2299      
  99MRI Studio2282      
  100PESTICA & SLOMOCO: physio and motion correction tools2235