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Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron477254      
  2ITK-SNAP158981      
  31000 Functional Connectomes Project101861      
  4DTI-TK70547      
  5CONN : functional connectivity toolbox44122      
  6EEGLAB38231      
  7FreeSurfer36679      
  8WFU_PickAtlas29778      
  9TOADS-CRUISE Brain Segmentation Tools27823      
  10DSI Studio27516      
  11Nilearn27273      
  12Multi-Modal MRI Reproducibility Resource25005      
  13IIT Human Brain Atlas (v.4.1)20730      
  14Functional Imaging BIRN15772      
  15BrainNet Viewer15766      
  16JIST: Java Image Science Toolkit15470      
  17PANDA: a pipeline tool for diffusion MRI14536      
  18IBSR14450      
  19MRIcroGL13780      
  20The Neuro Bureau13576      
  21Generalized PPI Toolbox12169      
  22MINC - Medical Image NetCDF10943      
  23NeuroDebian10406      
  24BrainVisa Morphologist extensions10305      
  25GIFTI10125      
  26Solar Eclipse Imaging Genetics tools10081      
  27Mango9390      
  283D Slicer9387      
  29MITK Diffusion8858      
  30MRtrix8827      
  31BrainMap Database8790      
  32Talairach Daemon8771      
  33BioImage Suite8345      
  34BrainVISA7899      
  35Automatic Registration Toolbox7783      
  36fMRI-CPCA7431      
  37Subject Order-Independent Group ICA7344      
  38Neuroimaging Made Easy Blog7256      
  39Diffusion Toolkit / TrackVis7106      
  40BrainMask Volume Processing Tool6388      
  41XNAT Extras6281      
  42Artifact Detection Tools (ART)6265      
  43fNIRS Data Analysis Environment5987      
  44NYU CSC TestRetest5661      
  45FSL5655      
  463DSlicerLupusLesionModule5629      
  47Data Format Tools5550      
  48Hammer And WML Modules for 3D Slicer5421      
  49Spatially Constrained Parcellation5368      
  50Group ICA Toolbox (GIFT and EEGIFT)5332      
  51BrainVoyager5331      
  52Computational Morphometry Toolkit (CMTK)4955      
  53LONI Pipeline Environment4933      
  54SRI24 Atlas: Normal Adult Brain Anatomy4718      
  55Network-Based Statistic (NBS)4571      
  56NeuroImaging Analysis Kit (NIAK)4539      
  57BrainVoyager Brain Tutor4496      
  58UNC 0-1-2 Infant Atlases4406      
  59Human Imaging Database (HID)4247      
  60Source Information Flow Toolbox4013      
  61Center for Functional Neuroimaging Tech3992      
  62GRETNA3717      
  63SPM3699      
  64ABSORB for groupwise registration3554      
  65MATLAB Tutorial on Diffusion Tensor MRI3484      
  66FBIRN Image Processing Scripts (FIPS)3479      
  67NIfTI3416      
  68TumorSim3404      
  69HAMMER: Deformable Registration3314      
  70GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3272      
  71SPHARM-PDM Toolbox3227      
  72MRI Defacer3170      
  73ABC (Atlas Based Classification)3111      
  74BrainSuite3088      
  75Maps4Mipav (Exploratory JIST) 3079      
  76Vaa3D and Vaa3D-Neuron3076      
  77BXH/XCEDE Tools3015      
  78dcm2nii2952      
  79FMRIpower2869      
  802008 MICCAI MS Lesion Segmentation Challenge2857      
  81Optseq - fMRI Event Scheduler2856      
  82REX2834      
  83Pipeline system for Octave and Matlab2794      
  84DWI/DTI Quality Control Tool: DTIPrep2780      
  85CANDI Neuroimaging Access Point2777      
  86Task Independent Fluctuations Discussion2769      
  87LONI Debabeler2728      
  88GLIRT2727      
  89CBS High-Res Brain Processing Tools2680      
  903T DWI test-retest reliability dataset2662      
  91JIP fMRI Analysis Toolkit2455      
  92MIPAV2414      
  93DicomBrowser2412      
  94iBEAT2408      
  95MARS (Multi-Atlas Robust Segmentation)2398      
  96Licensing2394      
  97age-ility2357      
  98XNAT2335      
  99MRI Studio2313      
  100Numerical Fibre Generator (NFG)2285