Below is a list of the tools and resources that have had forum messages posted directly through NITRC. They are ranked in order starting with the tool/resource that has the most posted forum messages.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Posts
1
CONN : functional connectivity toolbox
14279
2
NITRC Community
3293
3
Vaa3D and Vaa3D-Neuron
2577
4
Seed-based d Mapping (SDM, formerly Signed Differential Mapping)
1338
5
1000 Functional Connectomes Project
1328
6
Network-Based Statistic (NBS)
1244
7
Computational Morphometry Toolkit (CMTK)
876
8
dcm2nii
822
9
SPHARM-PDM Toolbox
784
10
MRIcroGL
701
11
BrainNet Viewer
685
12
Generalized PPI Toolbox
582
13
Diffusional Kurtosis Estimator
530
14
MRIcron
518
15
BioImage Suite
433
16
DWI/DTI Quality Control Tool: DTIPrep
373
17
PANDA: a pipeline tool for diffusion MRI
358
18
Surf Ice
252
19
WFU_PickAtlas
238
20
Automatic Registration Toolbox
211
21
NeuroImaging Analysis Kit (NIAK)
199
22
PESTICA & SLOMOCO: physio and motion correction tools
197
23
GIFTI
188
24
SPM for fNIRS toolbox
180
25
The Neuro Bureau
166
26
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
132
27
IIT Human Brain Atlas (v.5.0)
122
28
Wisconsin White Matter Hyperintensities Segmentation Toolbox
121
29
BXH/XCEDE Tools
118
30
Graph Theory GLM (GTG) MATLAB Toolbox
117
31
The Grid Code Analysis Toolbox (GridCAT)
107
32
Artifact Detection Tools (ART)
99
33
JIST: Java Image Science Toolkit
97
34
IBSR
96
35
NIfTI
91
36
NiiStat
90
37
Pipeline system for Octave and Matlab
86
38
Subject Order-Independent Group ICA
84
39
Camino
69
40
TOADS-CRUISE Brain Segmentation Tools
68
41
Hammer And WML Modules for 3D Slicer
64
42
masked ICA (mICA) Toolbox
57
43
SPHARM-MAT
55
44
Nutil - Neuroimaging utilities
53
45
NITRC Computational Environment (NITRC-CE)
53
46
Robust Brain Extraction (ROBEX)
52
47
mri_reface
52
48
QuickNII - Serial section aligner to volumetric atlases
50
49
BetA-Series COrrelation
50
50
Waxholm Space Atlas of the Sprague Dawley Rat Brain
44
51
HAMMER: Deformable Registration
40
52
TumorSim
38
53
isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab
37
54
Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)
36
55
NIDB - Neuroinformatics Database
34
56
Robust Biological Parametric Mapping
33
57
Hitachi2nirs
33
58
Spatially Constrained Parcellation
32
59
Framewise Integrated Real-time MRI Monitoring
29
60
CANDI Neuroimaging Access Point
27
61
Mayo Clinic Adult Lifespan Template and Atlases
27
62
CIFTI Connectivity File Format
26
63
C-PAC
26
64
Solar Eclipse Imaging Genetics tools
26
65
AutoSeg
25
66
CBS High-Res Brain Processing Tools
25
67
BraTumIA (Brain Tumor Image Analysis)
24
68
ShapeWorks
23
69
Resource Ontology Discussion Group
22
70
Task Independent Fluctuations Discussion
21
71
iBEAT
21
72
SVNTest
21
73
GRETNA
19
74
UNC-Wisconsin Neurodevelopment Rhesus MRI Database
18
75
fNIRS Data Analysis Environment
16
76
BRAINSTools
16
77
SIGMA Rat Brain Templates and Atlases
16
78
Conferences, Workshops and Meetings
15
79
HAMMER Suite
14
80
JIP fMRI Analysis Toolkit
14
81
3T DWI test-retest reliability dataset
14
82
PhysIO Toolbox
14
83
GLIRT
13
84
Spanish Resting State Network
13
85
QModeling
13
86
DCP：Diffusion Connectome Pipeline
13
87
Functional Connectivity Community
13
88
INIA19 Primate Brain Atlas
13
89
GIMME (Group Iterative Multiple Model Estimation)
13
90
Rosetta Bit
12
91
Best Practices for Research Science
12
92
SVV
12
93
Functional Analysis of Diffusion Tensor
12
94
SpineSegmentation module for 3DSlicer
11
95
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
11
96
NeuroPub Visualizer
11
97
REX
11
98
Resting State Hemodynamic Response Function Retrieval and Deconvolution (RS-HRF)
11
99
SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation
10
100
Rodent Cortical Thickness Analysis
10