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PubMed Mentions ( 27 )+
Tools for knowledge acquisition within the NeuroScholar system and their application to anatomical tract-tracing data.
Description: Burns, Gully A P C, et al. Tools for knowledge acquisition within the NeuroScholar system and their application to anatomical tract-tracing data. ''J Biomed Discov Collab''. 2006 Aug 8; '''1''': 10
Updated: Dec 16, 2017
Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis.
Description: Bezgin, Gleb, et al. Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis. ''Neuroinformatics''. 2009 Spring; '''7''' (1):7-22
Updated: Dec 16, 2017
The connectome viewer toolkit: an open source framework to manage, analyze, and visualize connectomes.
Description: Gerhard, Stephan, et al. The connectome viewer toolkit: an open source framework to manage, analyze, and visualize connectomes. ''Front Neuroinform''. 2011; '''5''': 3
Updated: Dec 16, 2017
High-accuracy neurite reconstruction for high-throughput neuroanatomy.
Description: Helmstaedter, Moritz, et al. High-accuracy neurite reconstruction for high-throughput neuroanatomy. ''Nat Neurosci''. 2011 Jul 10; '''14''' (8):1081-8
Updated: Dec 16, 2017
Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case.
Description: Russ, Thomas A, et al. Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case. ''BMC Bioinformatics''. 2011 Aug 22; '''12''': 351
Updated: Dec 16, 2017
A broadly applicable 3-D neuron tracing method based on open-curve snake.
Description: Wang, Yu, et al. A broadly applicable 3-D neuron tracing method based on open-curve snake. ''Neuroinformatics''. 2011 Sep; '''9''' (2-3):193-217
Updated: Dec 16, 2017
Automated reconstruction of neural tissue and the role of large-scale simulation.
Description: Kozloski, James. Automated reconstruction of neural tissue and the role of large-scale simulation. ''Neuroinformatics''. 2011 Sep; '''9''' (2-3):133-42
Updated: Dec 16, 2017
Automated tracing of neurites from light microscopy stacks of images.
Description: Chothani, Paarth, et al. Automated tracing of neurites from light microscopy stacks of images. ''Neuroinformatics''. 2011 Sep; '''9''' (2-3):263-78
Updated: Dec 16, 2017
The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions.
Description: Brown, Kerry M, et al. The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. ''Neuroinformatics''. 2011 Sep; '''9''' (2-3):143-57
Updated: Dec 16, 2017
The DIADEM metric: comparing multiple reconstructions of the same neuron.
Description: Gillette, Todd A, et al. The DIADEM metric: comparing multiple reconstructions of the same neuron. ''Neuroinformatics''. 2011 Sep; '''9''' (2-3):233-45
Updated: Dec 16, 2017
The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data.
Description: Laird, Angela R, et al. The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data. ''BMC Res Notes''. 2011 Sep 9; '''4''': 349
Updated: Dec 16, 2017
Data sharing in neuroimaging research.
Description: Poline, Jean-Baptiste, et al. Data sharing in neuroimaging research. ''Front Neuroinform''. 2012; '''6''': 9
Updated: Dec 16, 2017
NetMets: software for quantifying and visualizing errors in biological network segmentation.
Description: Mayerich, David, et al. NetMets: software for quantifying and visualizing errors in biological network segmentation. ''BMC Bioinformatics''. 2012; '''13 Suppl 8''': S7
Updated: Dec 16, 2017
The connectome mapper: an open-source processing pipeline to map connectomes with MRI.
Description: Daducci, Alessandro, et al. The connectome mapper: an open-source processing pipeline to map connectomes with MRI. ''PLoS One''. 2012; '''7''' (12):e48121
Updated: Dec 16, 2017
MEG-SIM: a web portal for testing MEG analysis methods using realistic simulated and empirical data.
Description: Aine, C J, et al. MEG-SIM: a web portal for testing MEG analysis methods using realistic simulated and empirical data. ''Neuroinformatics''. 2012 Apr; '''10''' (2):141-58
Updated: Dec 16, 2017
neuroVIISAS: approaching multiscale simulation of the rat connectome.
Description: Schmitt, Oliver, et al. neuroVIISAS: approaching multiscale simulation of the rat connectome. ''Neuroinformatics''. 2012 Jul; '''10''' (3):243-67
Updated: Dec 16, 2017
Visualizing multiple word similarity measures.
Description: Kievit-Kylar, Brent, et al. Visualizing multiple word similarity measures. ''Behav Res Methods''. 2012 Sep; '''44''' (3):656-74
Updated: Dec 16, 2017
Sharing heterogeneous data: the national database for autism research.
Description: Hall, Dan, et al. Sharing heterogeneous data: the national database for autism research. ''Neuroinformatics''. 2012 Oct; '''10''' (4):331-9
Updated: Dec 16, 2017
Three-dimensional analysis of spiny dendrites using straightening and unrolling transforms.
Description: Morales, Juan, et al. Three-dimensional analysis of spiny dendrites using straightening and unrolling transforms. ''Neuroinformatics''. 2012 Oct; '''10''' (4):391-407
Updated: Dec 16, 2017
BrainNet Viewer: a network visualization tool for human brain connectomics.
Description: Xia, Mingrui, et al. BrainNet Viewer: a network visualization tool for human brain connectomics. ''PLoS One''. 2013; '''8''' (7):e68910
Updated: Dec 16, 2017
The minimal preprocessing pipelines for the Human Connectome Project.
Description: Glasser, Matthew F, et al. The minimal preprocessing pipelines for the Human Connectome Project. ''Neuroimage''. 2013 Oct 15; '''80''': 105-24
Updated: Dec 16, 2017
The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.
Description: Clark, Kenneth, et al. The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository. ''J Digit Imaging''. 2013 Dec; '''26''' (6):1045-57
Updated: Dec 16, 2017
The Connectome Visualization Utility: software for visualization of human brain networks.
Description: LaPlante, Roan A, et al. The Connectome Visualization Utility: software for visualization of human brain networks. ''PLoS One''. 2014; '''9''' (12):e113838
Updated: Dec 16, 2017
The CAVE artists.
Description: Lewis, Dyani. The CAVE artists. ''Nat Med''. 2014 Mar; '''20''' (3):228-30
Updated: Dec 16, 2017
Brainography: an atlas-independent surface and network rendering tool for neural connectivity visualization.
Description: LoCastro, E, et al. Brainography: an atlas-independent surface and network rendering tool for neural connectivity visualization. ''Neuroinformatics''. 2014 Apr; '''12''' (2):355-9
Updated: Dec 16, 2017
A mesoscale connectome of the mouse brain.
Description: Oh, Seung Wook, et al. A mesoscale connectome of the mouse brain. ''Nature''. 2014 Apr 10; '''508''' (7495):207-14
Updated: Dec 16, 2017
Open access: sharing your data is easier than you think.
Description: Eglen, Stephen. Open access: sharing your data is easier than you think. ''Nature''. 2014 Jun 19; '''510''' (7505):340
Updated: Dec 16, 2017