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mBIRN Imaging Protocols
Description: Optimized imaging protocols for both structural and diffusion tensor imaging (DTI) experiments.
Updated: Mar 20, 2008
mBIRN Tools Primer
Description: mBIRN Tools Primer for the set of mBIRN-related tools
Updated: Mar 20, 2008
Morphometry BIRN Brochure
Description: Morphometry BIRN Brochure
Updated: Mar 20, 2008
PubMed Mentions ( 52 )+
[Comparative studies of contractile heart function using impedance, echo-, radio- and apex cardiography].
Description: Eisenberg, B M, et al. [Comparative studies of contractile heart function using impedance, echo-, radio- and apex cardiography]. ''Z Gesamte Inn Med''. 1985 Jul 1; '''40''' (13):388-92
Updated: Dec 16, 2017
Myocardial ultrasonic tissue characterization for estimating histological abnormalities in hypertrophic cardiomyopathy: comparison with endomyocardial biopsy findings.
Description: Mizuno, R, et al. Myocardial ultrasonic tissue characterization for estimating histological abnormalities in hypertrophic cardiomyopathy: comparison with endomyocardial biopsy findings. ''Cardiology''. 2001; '''96''' (1):16-23
Updated: Dec 16, 2017
E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains.
Description: Martone, Maryann E, et al. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. ''Nat Neurosci''. 2004 May; '''7''' (5):467-72
Updated: Dec 16, 2017
Standard atlas space for C57BL/6J neonatal mouse brain.
Description: Lee, Erh-Fang, et al. Standard atlas space for C57BL/6J neonatal mouse brain. ''Anat Embryol (Berl)''. 2005 Nov; '''210''' (4):245-63
Updated: Dec 16, 2017
A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels.
Description: Keator, David Bryant, et al. A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels. ''Neuroinformatics''. 2006; '''4''' (2):199-212
Updated: Dec 16, 2017
Roots of the maxillary first and second molars in horizontal relation to alveolar cortical plates and maxillary sinus: computed tomography assessment for infection spread.
Description: Ariji, Yoshiko, et al. Roots of the maxillary first and second molars in horizontal relation to alveolar cortical plates and maxillary sinus: computed tomography assessment for infection spread. ''Clin Oral Investig''. 2006 Mar; '''10''' (1):35-41
Updated: Dec 16, 2017
Lobar distribution of lesion volumes in late-life depression: the Biomedical Informatics Research Network (BIRN).
Description: MacFall, James R, et al. Lobar distribution of lesion volumes in late-life depression: the Biomedical Informatics Research Network (BIRN). ''Neuropsychopharmacology''. 2006 Jul; '''31''' (7):1500-7
Updated: Dec 16, 2017
Bio-image warehouse system: concept and implementation of a diagnosis-based data warehouse for advanced imaging modalities in neuroradiology.
Description: Minati, L, et al. Bio-image warehouse system: concept and implementation of a diagnosis-based data warehouse for advanced imaging modalities in neuroradiology. ''J Digit Imaging''. 2007 Mar; '''20''' (1):32-41
Updated: Dec 16, 2017
MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification.
Description: Crook, Sharon, et al. MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification. ''Neuroinformatics''. 2007 Summer; '''5''' (2):96-104
Updated: Dec 16, 2017
CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.
Description: Zhao, Hui, et al. CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. ''Bioinformatics''. 2007 Jul 1; '''23''' (13):1700-1
Updated: Dec 16, 2017
Quantitative trait loci linked to thalamus and cortex gray matter volumes in BXD recombinant inbred mice.
Description: Dong, H, et al. Quantitative trait loci linked to thalamus and cortex gray matter volumes in BXD recombinant inbred mice. ''Heredity (Edinb)''. 2007 Jul; '''99''' (1):62-9
Updated: Dec 16, 2017
High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology.
Description: Johnson, G Allan, et al. High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. ''Neuroimage''. 2007 Aug 1; '''37''' (1):82-9
Updated: Dec 16, 2017
Glomerulotubular disconnection in neonatal mice after relief of partial ureteral obstruction.
Description: Thornhill, B A, et al. Glomerulotubular disconnection in neonatal mice after relief of partial ureteral obstruction. ''Kidney Int''. 2007 Nov; '''72''' (9):1103-12
Updated: Dec 16, 2017
Feasibility of multi-site clinical structural neuroimaging studies of aging using legacy data.
Description: Fennema-Notestine, Christine, et al. Feasibility of multi-site clinical structural neuroimaging studies of aging using legacy data. ''Neuroinformatics''. 2007 Winter; '''5''' (4):235-45
Updated: Dec 16, 2017
Forty years on: Uta Frith's contribution to research on autism and dyslexia, 1966-2006.
Description: Bishop, Dorothy V M. Forty years on: Uta Frith's contribution to research on autism and dyslexia, 1966-2006. ''Q J Exp Psychol (Hove)''. 2008 Jan; '''61''' (1):16-26
Updated: Dec 16, 2017
Offering to share: how to put heads together in autism neuroimaging.
Description: Belmonte, Matthew K, et al. Offering to share: how to put heads together in autism neuroimaging. ''J Autism Dev Disord''. 2008 Jan; '''38''' (1):2-13
Updated: Dec 16, 2017
The effect of early human diet on caudate volumes and IQ.
Description: Isaacs, Elizabeth B, et al. The effect of early human diet on caudate volumes and IQ. ''Pediatr Res''. 2008 Mar; '''63''' (3):308-14
Updated: Dec 16, 2017
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.
Description: Bug, William J, et al. The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. ''Neuroinformatics''. 2008 Sep; '''6''' (3):175-94
Updated: Dec 16, 2017
Transport of Relational Structures in Groups of Diffeomorphisms.
Description: Younes, Laurent, et al. Transport of Relational Structures in Groups of Diffeomorphisms. ''J Math Imaging Vis''. 2008 Sep 1; '''32''' (1):41-56
Updated: Dec 16, 2017
Variation in mouse basolateral amygdala volume is associated with differences in stress reactivity and fear learning.
Description: Yang, Rebecca J, et al. Variation in mouse basolateral amygdala volume is associated with differences in stress reactivity and fear learning. ''Neuropsychopharmacology''. 2008 Oct; '''33''' (11):2595-604
Updated: Dec 16, 2017
Interactive exploration of neuroanatomical meta-spaces.
Description: Joshi, Shantanu H, et al. Interactive exploration of neuroanatomical meta-spaces. ''Front Neuroinform''. 2009; '''3''': 38
Updated: Dec 16, 2017
Collaborative computational anatomy: an MRI morphometry study of the human brain via diffeomorphic metric mapping.
Description: Miller, Michael I, et al. Collaborative computational anatomy: an MRI morphometry study of the human brain via diffeomorphic metric mapping. ''Hum Brain Mapp''. 2009 Jul; '''30''' (7):2132-41
Updated: Dec 16, 2017
Impact of breast milk on intelligence quotient, brain size, and white matter development.
Description: Isaacs, Elizabeth B, et al. Impact of breast milk on intelligence quotient, brain size, and white matter development. ''Pediatr Res''. 2010 Apr; '''67''' (4):357-62
Updated: Dec 16, 2017
An open source toolkit for medical imaging de-identification.
Description: Gonzalez, David Rodriguez, et al. An open source toolkit for medical imaging de-identification. ''Eur Radiol''. 2010 Aug; '''20''' (8):1896-904
Updated: Dec 16, 2017
FDI World Dental Federation: clinical criteria for the evaluation of direct and indirect restorations-update and clinical examples.
Description: Hickel, Reinhard, et al. FDI World Dental Federation: clinical criteria for the evaluation of direct and indirect restorations-update and clinical examples. ''Clin Oral Investig''. 2010 Aug; '''14''' (4):349-66
Updated: Dec 16, 2017
FDI World Dental Federation - clinical criteria for the evaluation of direct and indirect restorations. Update and clinical examples.
Description: Hickel, Reinhard, et al. FDI World Dental Federation - clinical criteria for the evaluation of direct and indirect restorations. Update and clinical examples. ''J Adhes Dent''. 2010 Aug; '''12''' (4):259-72
Updated: Dec 16, 2017
Targeted overexpression of human alpha-synuclein in oligodendroglia induces lesions linked to MSA-like progressive autonomic failure.
Description: Stemberger, Sylvia, et al. Targeted overexpression of human alpha-synuclein in oligodendroglia induces lesions linked to MSA-like progressive autonomic failure. ''Exp Neurol''. 2010 Aug; '''224''' (2):459-64
Updated: Dec 16, 2017
Federated web-accessible clinical data management within an extensible neuroimaging database.
Description: Ozyurt, I Burak, et al. Federated web-accessible clinical data management within an extensible neuroimaging database. ''Neuroinformatics''. 2010 Dec; '''8''' (4):231-49
Updated: Dec 16, 2017
Identification of imaging biomarkers in schizophrenia: a coefficient-constrained independent component analysis of the mind multi-site schizophrenia study.
Description: Kim, Dae Il, et al. Identification of imaging biomarkers in schizophrenia: a coefficient-constrained independent component analysis of the mind multi-site schizophrenia study. ''Neuroinformatics''. 2010 Dec; '''8''' (4):213-29
Updated: Dec 16, 2017
Human Ecstasy use is associated with increased cortical excitability: an fMRI study.
Description: Bauernfeind, Amy L, et al. Human Ecstasy use is associated with increased cortical excitability: an fMRI study. ''Neuropsychopharmacology''. 2011 May; '''36''' (6):1127-41
Updated: Dec 16, 2017
Applications of the pipeline environment for visual informatics and genomics computations.
Description: Dinov, Ivo D, et al. Applications of the pipeline environment for visual informatics and genomics computations. ''BMC Bioinformatics''. 2011 Jul 26; '''12''': 304
Updated: Dec 16, 2017
The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data.
Description: Laird, Angela R, et al. The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data. ''BMC Res Notes''. 2011 Sep 9; '''4''': 349
Updated: Dec 16, 2017
Neuropsychological testing and structural magnetic resonance imaging as diagnostic biomarkers early in the course of schizophrenia and related psychoses.
Description: Karageorgiou, Elissaios, et al. Neuropsychological testing and structural magnetic resonance imaging as diagnostic biomarkers early in the course of schizophrenia and related psychoses. ''Neuroinformatics''. 2011 Dec; '''9''' (4):321-33
Updated: Dec 16, 2017
XCEDE: an extensible schema for biomedical data.
Description: Gadde, Syam, et al. XCEDE: an extensible schema for biomedical data. ''Neuroinformatics''. 2012 Jan; '''10''' (1):19-32
Updated: Dec 16, 2017
Altered networks in bothersome tinnitus: a functional connectivity study.
Description: Burton, Harold, et al. Altered networks in bothersome tinnitus: a functional connectivity study. ''BMC Neurosci''. 2012 Jan 4; '''13''': 3
Updated: Dec 16, 2017
Do brain image databanks support understanding of normal ageing brain structure? A systematic review.
Description: Dickie, David Alexander, et al. Do brain image databanks support understanding of normal ageing brain structure? A systematic review. ''Eur Radiol''. 2012 Jul; '''22''' (7):1385-94
Updated: Dec 16, 2017
Resting functional connectivity of language networks: characterization and reproducibility.
Description: Tomasi, D, et al. Resting functional connectivity of language networks: characterization and reproducibility. ''Mol Psychiatry''. 2012 Jul; '''17''' (8):841-54
Updated: Dec 16, 2017
Neurodevelopmental model of schizophrenia: update 2012.
Description: Rapoport, J L, et al. Neurodevelopmental model of schizophrenia: update 2012. ''Mol Psychiatry''. 2012 Dec; '''17''' (12):1228-38
Updated: Dec 16, 2017
CORAL: QSPR model of water solubility based on local and global SMILES attributes.
Description: Toropov, Andrey A, et al. CORAL: QSPR model of water solubility based on local and global SMILES attributes. ''Chemosphere''. 2013 Jan; '''90''' (2):877-80
Updated: Dec 16, 2017
Towards automated detection of depression from brain structural magnetic resonance images.
Description: Kipli, Kuryati, et al. Towards automated detection of depression from brain structural magnetic resonance images. ''Neuroradiology''. 2013 May; '''55''' (5):567-84
Updated: Dec 16, 2017
The MCIC collection: a shared repository of multi-modal, multi-site brain image data from a clinical investigation of schizophrenia.
Description: Gollub, Randy L, et al. The MCIC collection: a shared repository of multi-modal, multi-site brain image data from a clinical investigation of schizophrenia. ''Neuroinformatics''. 2013 Jul; '''11''' (3):367-88
Updated: Dec 16, 2017
Widespread neuronal damage and cognitive dysfunction in spinocerebellar ataxia type 3.
Description: Lopes, Tatila Martins, et al. Widespread neuronal damage and cognitive dysfunction in spinocerebellar ataxia type 3. ''J Neurol''. 2013 Sep; '''260''' (9):2370-9
Updated: Dec 16, 2017
Brede tools and federating online neuroinformatics databases.
Description: Nielsen, Finn Arup. Brede tools and federating online neuroinformatics databases. ''Neuroinformatics''. 2014 Jan; '''12''' (1):27-37
Updated: Dec 16, 2017
Anti-cytokeratin CAM5.2 recognized CK8 mainly, but not CK18: comment on "Early assessment of axillary response with 18F-FDG PET/CT during neoadjuvant chemotherapy in stage II-III breast cancer: implications for surgical management of the axilla. Anna...
Description: Chao, Wan-Ru, et al. Anti-cytokeratin CAM5.2 recognized CK8 mainly, but not CK18: comment on "Early assessment of axillary response with 18F-FDG PET/CT during neoadjuvant chemotherapy in stage II-III breast cancer: implications for surgical management of the axilla. Annals of Surgical Oncology doi: 10.1245/s10434-013-2902-0 (2013)". ''Ann Surg Oncol''. 2014 Feb; '''21''' (2):699
Updated: Dec 16, 2017
Brain networks in schizophrenia.
Description: van den Heuvel, Martijn P, et al. Brain networks in schizophrenia. ''Neuropsychol Rev''. 2014 Mar; '''24''' (1):32-48
Updated: Dec 16, 2017
A review of feature reduction techniques in neuroimaging.
Description: Mwangi, Benson, et al. A review of feature reduction techniques in neuroimaging. ''Neuroinformatics''. 2014 Apr; '''12''' (2):229-44
Updated: Dec 16, 2017
The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools.
Description: Dinov, Ivo D, et al. The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools. ''Brain Imaging Behav''. 2014 Jun; '''8''' (2):311-22
Updated: Dec 16, 2017
Sparse multivariate autoregressive modeling for mild cognitive impairment classification.
Description: Li, Yang, et al. Sparse multivariate autoregressive modeling for mild cognitive impairment classification. ''Neuroinformatics''. 2014 Jul; '''12''' (3):455-69
Updated: Dec 16, 2017
Alterations of local spontaneous brain activity and connectivity in adults with high-functioning autism spectrum disorder.
Description: Itahashi, Takashi, et al. Alterations of local spontaneous brain activity and connectivity in adults with high-functioning autism spectrum disorder. ''Mol Autism''. 2015; '''6''': 30
Updated: Dec 16, 2017
Abnormal structure of fear circuitry in pediatric post-traumatic stress disorder.
Description: Keding, Taylor J, et al. Abnormal structure of fear circuitry in pediatric post-traumatic stress disorder. ''Neuropsychopharmacology''. 2015 Feb; '''40''' (3):537-45
Updated: Dec 16, 2017
Resting state fMRI in cluster headache: which role?
Description: Chiapparini, L, et al. Resting state fMRI in cluster headache: which role? ''Neurol Sci''. 2015 May; '''36 Suppl 1''': 47-50
Updated: Dec 16, 2017
The alterations in regional homogeneity of parieto-cingulate and temporo-cerebellum regions of first-episode medication-naive depression patients.
Description: Lai, Chien-Han, et al. The alterations in regional homogeneity of parieto-cingulate and temporo-cerebellum regions of first-episode medication-naive depression patients. ''Brain Imaging Behav''. 2016 Mar; '''10''' (1):187-94
Updated: Dec 16, 2017