Welcome to the collection of documents for NITRC Community.

Adding Documents: Members of NITRC Community may submit documents to the folders below; however, the moderator will decide whether or not to publish a document.

Deleting Documents: If you find an out-dated document, please send a request to moderator@nitrc.org.

Add New Document
Show documents in: 
Folders/DocumentsAdd
Application Publications ( 1 )+
Conferences ( 3 )+
Education ( 3 )+
Forum Attachments ( 2 )+
Job Postings ( 1 )+
News Releases ( 2 )+
NITRC Art Work ( 12 )+
NITRC Presentations ( 9 )+
NITRC Use Cases ( 1 )+
NITRC Videos ( 15 )+
Other Logos ( 8 )+
Publications ( 5 )+
Published Reviews ( 116 )+
ABSORB for groupwise registration ( 1 )+
Advanced Normalization Tools ( 1 )+
AFNI ( 6 )+
All ( 43 )+
Ardekani BA, Journal of Neuroscience Methods, 2005
Description: Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans
Updated: Sep 18, 2009
Arnold JB, Neuroimage, 2001
Description: Qualitative and Quantitative Evaluation of Six Algorithms for Correcting Intensity Nonuniformity Effects
Updated: Apr 7, 2009
Ceritoglu C, Frontiers in Human Neuroscience, 2010
Description: Large deformation diffeomorphic metric mapping registration of reconstructed 3D histological section images and in vivo MR images
Updated: Dec 14, 2010
Cherbuin N, PLoS ONE, 2009
Description: In Vivo Hippocampal Measurement and Memory: A Comparison of Manual Tracing and Automated Segmentation in a Large Community-Based Sample
Updated: Apr 27, 2009
Clark KA, Neuroimage, 2006
Description: Impact of acquisition protocols and processing streams on tissue segmentation of T1 weighted MR images
Updated: Apr 7, 2009
Cox RW, Magnetic Resonance in Medicine, 1999
Description: Real-Time 3D Image Registration for Functional MRI
Updated: Jul 16, 2010
Eglen SJ, BMC Neuroscience, 2008
Description: Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning
Updated: Jul 16, 2010
Fennema-Notestine C, Human Brain Mapping, 2006
Description: Quantitative Evaluation of Automated Skull-Stripping Methods Applied to Contemporary and Legacy Images: Effects of Daignosis, Bias Correction, and Slice Location
Updated: Sep 18, 2009
Gholipour A, IEEE Transactions on Medical Imaging, 2007
Description: Brain Functional Localization: A Survey of Image Registration Techniques
Updated: Dec 14, 2010
Gold S, Human Brain Mapping, 1998
Description: Functional MRI Statistical Software Packages: A Comparative Analysis
Updated: Apr 7, 2009
Hanke M, Neuroinformatics, 2009.
Description: PyMVPA: a Python Toolbox for Mltivariate Pattern Analysis of fMRI Data
Updated: May 14, 2010
Hellier P, IEEE Transactions on Medical Imaging, 2003
Description: Retrospective Evaluation of Intersubject Brain Registration
Updated: Apr 7, 2009
Jia H, NeuroImage, 2010
Description: ABSORB: Atlas building by self-organized registration and bundling
Updated: Jul 27, 2010
Ju L, NeuroImage, 2005
Description: Quantitative evaluation of three cortical surface flattening methods
Updated: Apr 7, 2009
Klein A, BMC Medical Imaging, 2005
Description: Mindboggle: Automated brain labeling with multiple atlases
Updated: Jul 16, 2010
Klein A, NeuroImage, 2005
Description: Mindboggle: a scatterbrained approach to automate brain labeling
Updated: Jul 16, 2010
Klein A, NeuroImage, 2008
Description: Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration
Updated: Nov 9, 2009
Lee JK, NeuroImage, 2006
Description: A novel quantitative cross-validation of different cortical surface reconstructi on algorithms using MRI phantom
Updated: Apr 7, 2009
Marcus DS, Neuroinformatics, 2007
Description: The Extensible Neuroimaging Archive Toolkit: An Informatics Platform for Managing, Exploring, and Sharing Neuroimaging Data
Updated: Jul 16, 2010
Mikheev A, Journal of Magnetic Resonance Imaging, 2008
Description: Fully Automatic Segmentation of the Brain From T1-Weighted MRI Using Bridge Burner Algorithm
Updated: Dec 14, 2010
Morey RA, NeuroImage, 2009
Description: A comparison of automated segmentation and manual tracing for quantifying hippocampal and amygdala volumes
Updated: Nov 10, 2009
Morgan VL, Computerized Medical Imaging and Graphics, 2007
Description: Comparison of fMRI statistical software packages and strategies for analysis of images containing random and stimulus-correlated motion
Updated: Apr 7, 2009
Muller H-M, Neuroinformatics, 2008
Description: Textpresso for Neuroscience: Searching the Full Text of Thousands of Neuroscience Research Papers
Updated: Jul 16, 2010
Pengas G, Journal of Neuroimaging, 2008
Description: Comparative Reliability of Total Intracranial Volume Estimation Methods and the Influence of Atrophy in a Longitudinal Semantic Dementia Cohort
Updated: Apr 7, 2009
Peng H, Nature Biotechnology, 2010
Description: V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
Updated: Jul 16, 2010
Rex DE, NeuroImage, 2004
Description: A meta-algorithm for brain extraction in MRI
Updated: Sep 18, 2009
Rodionov R, Magnetic Resonance Imaging, 2009
Description: Evaluation of atlas-based segmentation of hippocampi in healthy humans
Updated: Sep 18, 2009
Rohlfing T, Human Brain Mapping, 2010
Description: The SRI24 Multichannel Atlas of Normal Adult Human Brain Structure
Updated: Jul 16, 2010
Rohlfing T, Proc Soc Photo Opt Instrum Eng, 2008
Description: The SRI24 Multi-Channel Brain Atlas: Construction and Applications
Updated: Jul 16, 2010
Segonne F, NeuroImage, 2004
Description: A hybrid approach to the skull stripping problem in MRI
Updated: Jul 16, 2010
Shattuck DW, NeuroImage, 2009
Description: Online resource for validation of brain segmentation methods
Updated: Jul 16, 2010
Sidtis J, NeuroImage , 2003.
Description: Predicting performance from functional imaging data: methods matter.
Updated: Nov 9, 2009
Sled J, IEEE Transactions on Medical Imaging, 1998
Description: A Nonparametric Method for Automatic Correction of Intensity Nonuniformity in MRI Data
Updated: Dec 14, 2010
Tae WS, Neuroradiology, 2007
Description: Validation of hippocampal volumes measured using a manual method and two automated methods (FreeSurfer and IBASPM) in chronic major depressive disorder
Updated: Apr 7, 2009
Tsang O, Conf Proc IEEE Eng Med Biol Soc, 2008
Description: Comparison of tissue segmentation algorithms in neuroimage analysis software tools
Updated: Dec 14, 2010
Wang Y, Neuroimage, 2011
Description: DTI registration in atlas based fiber analysis of infantile Krabbe disease
Updated: Feb 4, 2013
Warfield SK, IEEE Transactions on Medical Imaging, 2004
Description: Simultaneous Truth and Performance Level Estimation (STAPLE): An Algorithm for the Validation of Image Segmentation
Updated: Jul 16, 2010
Wu M, Med Image Comput Comput Assist Interv, 2008
Description: Comparison of EPI Distortion Correction Methods in Diffusion Tensor MRI Using a Novel Framework
Updated: Dec 14, 2010
Yassa MA, NeuroImage, 2009
Description: A quantitative evaluation of cross-participant registration techniques for MRI studies of the medial temporal lobe
Updated: Nov 10, 2009
Yeh F-C, IEEE Transactions on Medical Imaging, 2010.
Description: Generalized q-Sampling Imaging
Updated: Sep 9, 2010
Yeh FC, Neuroimage, 2011 (1)
Description: Estimation of fiber orientation and spin density distribution by diffusion deconvolution
Updated: Feb 5, 2013
Yeh FC, Neuroimage, 2011 (2)
Description: NTU-90: a high angular resolution brain atlas constructed by q-space diffeomorphic reconstruction
Updated: Feb 5, 2013
Yushkevich PA, NeuroImage, 2006
Description: User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability
Updated: Jul 16, 2010
Automatic Registration Toolbox ( 2 )+
BrainMask Volume Processing Tool ( 2 )+
BRAINSDemonWarp ( 1 )+
BrainSuite ( 5 )+
BrainVISA ( 1 )+
DSI Studio ( 3 )+
DTI-TK ( 1 )+
FreeSurfer ( 11 )+
FSL ( 11 )+
ITK-SNAP ( 1 )+
LDDMM ( 2 )+
MedINRIA ( 1 )+
Mindboggle: automated brain labeling ( 2 )+
N3 - MINC B0 nonuniformity correction ( 1 )+
PyMVPA ( 1 )+
Segmentation Validation Engine ( 1 )+
Spatial Analysis 3D ( 1 )+
SPM ( 10 )+
SRI24 Atlas: Normal Adult Brain Anatomy ( 2 )+
STAPLE ( 1 )+
Template Image Processing Library ( 1 )+
Textpresso - literature search engine ( 1 )+
Vaa3D and Vaa3D-Neuron ( 1 )+
WFU_PickAtlas ( 1 )+
XNAT ( 1 )+
PubMed Mentions ( 47 )+
Scientific Posters ( 2 )+